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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102582969   WD repeat-containing protein 3-like 
 sly-u.5   101257021   uncharacterized LOC101257021 
 ath-u.5   AT3G21540   transducin family protein / WD-40 repeat family protein 
 gma-u.5   100800955   WD repeat-containing protein 3 
 gma-u.5   100775810   WD repeat-containing protein 3 
 vvi-u.5   100250257   uncharacterized LOC100250257 
 ppo-u.5   18100122   uncharacterized LOC18100122 
 mtr-u.5   25494154   WD repeat-containing protein 3 
 osa-u.5   4331644   uncharacterized LOC4331644 
 zma-u.5   100501489   uncharacterized LOC100501489 

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Top 50 coexpressed genes to 102582969 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102582969 (sot-r.1 coexpression data)

CoexMap"102582969"


sotLOC102582969 | Entrez gene ID : 102582969      
Species sot sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi tae bna ghi
Paralog 1 1 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03008 [list] [network] Ribosome biogenesis in eukaryotes (88 genes)
GO BP
GO:0030490 [list] [network] maturation of SSU-rRNA  (41 genes)  IEA  
GO CC
GO:0034388 [list] [network] Pwp2p-containing subcomplex of 90S preribosome  (6 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (45 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (19 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4214 genes)  IEA  
Protein XP_006367203.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  chlo_mito 3  (predict for XP_006367203.1)
Subcellular
localization
TargetP
other 2  (predict for XP_006367203.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102582969

.
sly-u.5
for
101257021

.
ath-u.5
for
AT3G21540

.
gma-u.5
for
100800955

.
gma-u.5
for
100775810

.
vvi-u.5
for
100250257

.
ppo-u.5
for
18100122

.
mtr-u.5
for
25494154

.
osa-u.5
for
4331644

.
zma-u.5
for
100501489

.


Ortholog ID: 8955
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol AT3G21540 LOC100775810 LOC100800955 LOC101257021 LOC4331644 LOC100501489 LOC103870858 LOC100250257 LOC18100122 LOC25494154 LOC123093534 LOC123098806 LOC123449829 LOC107887878 LOC107899496 LOC106380627 LOC106352553 CHLRE_10g438700v5 LOC8085468 LOC102603891 LOC102582969 LOC102607925 LOC100822480 LOC107764143 LOC107818696
Function* transducin family protein / WD-40 repeat family protein WD repeat-containing protein 3 WD repeat-containing protein 3 uncharacterized LOC101257021 uncharacterized LOC4331644 uncharacterized LOC100501489 WD repeat-containing protein 3 uncharacterized LOC100250257 uncharacterized LOC18100122 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3-like uncharacterized protein WD repeat-containing protein 3 WD repeat-containing protein 3-like WD repeat-containing protein 3-like uncharacterized LOC102607925 WD repeat-containing protein 3 uncharacterized LOC107764143 uncharacterized LOC107818696
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi01230 Biosynthesis of amino acids 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00052 Galactose metabolism 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi00040 Pentose and glucuronate interconversions 2
ghi00052 Galactose metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821708 100775810 100800955 101257021 4331644 100501489 103870858 100250257 18100122 25494154 123093534 123098806 123449829 107887878 107899496 106380627 106352553 5715972 8085468 102603891 102582969 102607925 100822480 107764143 107818696
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