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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103870858   WD repeat-containing protein 3 
 bna-r.1   106352553   WD repeat-containing protein 3-like 
 bna-r.1   106380627   WD repeat-containing protein 3 
 ath-u.5   AT3G21540   transducin family protein / WD-40 repeat family protein 
 ghi-r.1   107899496   WD repeat-containing protein 3 
 ghi-r.1   107887878   WD repeat-containing protein 3 
 cit-r.1   102607925   uncharacterized LOC102607925 
 gma-u.5   100800955   WD repeat-containing protein 3 
 gma-u.5   100775810   WD repeat-containing protein 3 
 vvi-u.5   100250257   uncharacterized LOC100250257 
 ppo-u.5   18100122   uncharacterized LOC18100122 
 mtr-u.5   25494154   WD repeat-containing protein 3 
 sly-u.5   101257021   uncharacterized LOC101257021 
 sot-r.1   102582969   WD repeat-containing protein 3-like 
 sot-r.1   102603891   WD repeat-containing protein 3-like 
 nta-r.1   107768283   uncharacterized LOC107768283 
 nta-r.1   107764143   uncharacterized LOC107764143 
 nta-r.1   107818696   uncharacterized LOC107818696 
 osa-u.5   4331644   uncharacterized LOC4331644 
 zma-u.5   100501489   uncharacterized LOC100501489 
 tae-r.2   123093534   WD repeat-containing protein 3 
 tae-r.2   123087844   WD repeat-containing protein 3 
 tae-r.2   123098806   WD repeat-containing protein 3 
 hvu-r.1   123449829   WD repeat-containing protein 3 
 sbi-r.1   8085468   WD repeat-containing protein 3 
 bdi-r.1   100822480   WD repeat-containing protein 3 
 cre-r.1   CHLRE_10g438700v5   uncharacterized protein 

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Top 50 coexpressed genes to 103870858 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103870858 (bra-r.6 coexpression data)

CoexMap"103870858"


braLOC103870858 | Entrez gene ID : 103870858    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 1 2 1 2 1 1 1 1 2 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03008 [list] [network] Ribosome biogenesis in eukaryotes (1509 genes)
GO BP
GO:0030490 [list] [network] maturation of SSU-rRNA  (93 genes)  IEA  
GO CC
GO:0034388 [list] [network] Pwp2p-containing subcomplex of 90S preribosome  (7 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (75 genes)  IEA  
GO MF
GO:0030515 [list] [network] snoRNA binding  (37 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009147284.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  mito 1,  cyto_nucl 1  (predict for XP_009147284.1)
Subcellular
localization
TargetP
other 4  (predict for XP_009147284.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103870858
bna-r.1
for
106352553
bna-r.1
for
106380627
ath-u.5
for
AT3G21540
ghi-r.1
for
107899496
ghi-r.1
for
107887878
cit-r.1
for
102607925
gma-u.5
for
100800955
gma-u.5
for
100775810
vvi-u.5
for
100250257
ppo-u.5
for
18100122
mtr-u.5
for
25494154
sly-u.5
for
101257021
sot-r.1
for
102582969
sot-r.1
for
102603891
nta-r.1
for
107768283
nta-r.1
for
107764143
nta-r.1
for
107818696
osa-u.5
for
4331644
zma-u.5
for
100501489
tae-r.2
for
123093534
tae-r.2
for
123087844
tae-r.2
for
123098806
hvu-r.1
for
123449829
sbi-r.1
for
8085468
bdi-r.1
for
100822480
cre-r.1
for
CHLRE_10g438700v5


Ortholog ID: 8955
Species bra bna bna ath ghi ghi cit gma gma vvi ppo mtr sly sot sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC103870858 LOC106352553 LOC106380627 AT3G21540 LOC107899496 LOC107887878 LOC102607925 LOC100800955 LOC100775810 LOC100250257 LOC18100122 LOC25494154 LOC101257021 LOC102582969 LOC102603891 LOC107768283 LOC107764143 LOC107818696 LOC4331644 LOC100501489 LOC123093534 LOC123087844 LOC123098806 LOC123449829 LOC8085468 LOC100822480 CHLRE_10g438700v5
Function* WD repeat-containing protein 3 WD repeat-containing protein 3-like WD repeat-containing protein 3 transducin family protein / WD-40 repeat family protein WD repeat-containing protein 3 WD repeat-containing protein 3 uncharacterized LOC102607925 WD repeat-containing protein 3 WD repeat-containing protein 3 uncharacterized LOC100250257 uncharacterized LOC18100122 WD repeat-containing protein 3 uncharacterized LOC101257021 WD repeat-containing protein 3-like WD repeat-containing protein 3-like uncharacterized LOC107768283 uncharacterized LOC107764143 uncharacterized LOC107818696 uncharacterized LOC4331644 uncharacterized LOC100501489 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 WD repeat-containing protein 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi00040 Pentose and glucuronate interconversions 2
ghi00052 Galactose metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi01230 Biosynthesis of amino acids 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00052 Galactose metabolism 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 7
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 9
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 11
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103870858 106352553 106380627 821708 107899496 107887878 102607925 100800955 100775810 100250257 18100122 25494154 101257021 102582969 102603891 107768283 107764143 107818696 4331644 100501489 123093534 123087844 123098806 123449829 8085468 100822480 5715972
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