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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102583635   replication factor C subunit 2 
 sly-u.5   101268826   replication factor C subunit 2 
 nta-r.1   107760689   replication factor C subunit 2 
 nta-r.1   107783617   replication factor C subunit 2-like 
 ath-u.5   EMB1968   ATPase family associated with various cellular activities (AAA) 
 gma-u.5   100798331   replication factor C subunit 2 
 gma-u.5   100788329   replication factor C subunit 2 
 bra-r.6   103873011   replication factor C subunit 4 
 bra-r.6   103835735   replication factor C subunit 4 
 vvi-u.5   100245502   replication factor C subunit 4 
 ppo-u.5   7460974   replication factor C subunit 2 
 mtr-u.5   11414806   replication factor C subunit 2 
 ghi-r.1   121218260   replication factor C subunit 4 
 ghi-r.1   107901388   replication factor C subunit 4 
 bna-r.1   106425967   replication factor C subunit 4-like 
 bna-r.1   106347378   replication factor C subunit 4 
 bna-r.1   106397437   replication factor C subunit 4-like 
 cit-r.1   102616275   replication factor C subunit 4 
 osa-u.5   4351654   replication factor C subunit 2-like 
 zma-u.5   100282197   replication factor C subunit 2 
 tae-r.2   123120069   replication factor C subunit 2 
 tae-r.2   123111058   replication factor C subunit 2 
 tae-r.2   123102840   replication factor C subunit 2 
 hvu-r.1   123395624   replication factor C subunit 2 
 sbi-r.1   8059801   replication factor C subunit 2 
 sbi-r.1   8076299   replication factor C subunit 2 
 bdi-r.1   100825772   replication factor C subunit 2 
 cre-r.1   CHLRE_06g251800v5   uncharacterized protein 

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Top 50 coexpressed genes to 102583635 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102583635 (sot-r.1 coexpression data)

CoexMap"102583635"


sotLOC102583635 | Entrez gene ID : 102583635      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 2 1 2 2 1 1 1 2 3 1 1 1 3 1 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03030 [list] [network] DNA replication (40 genes)
sot03410 [list] [network] Base excision repair (50 genes)
sot03420 [list] [network] Nucleotide excision repair (75 genes)
sot03430 [list] [network] Mismatch repair (31 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (71 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (284 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (10 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2556 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (12 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (431 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1885 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2117 genes)  IEA  
Protein XP_006351139.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  mito 1,  plas 1,  E.R. 1,  cysk 1,  cysk_plas 1,  E.R._plas 1,  mito_plas 1  (predict for XP_006351139.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006351139.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102583635
sly-u.5
for
101268826
nta-r.1
for
107760689
nta-r.1
for
107783617
ath-u.5
for
EMB1968
gma-u.5
for
100798331
gma-u.5
for
100788329
bra-r.6
for
103873011
bra-r.6
for
103835735
vvi-u.5
for
100245502
ppo-u.5
for
7460974
mtr-u.5
for
11414806
ghi-r.1
for
121218260
ghi-r.1
for
107901388
bna-r.1
for
106425967
bna-r.1
for
106347378
bna-r.1
for
106397437
cit-r.1
for
102616275
osa-u.5
for
4351654
zma-u.5
for
100282197
tae-r.2
for
123120069
tae-r.2
for
123111058
tae-r.2
for
123102840
hvu-r.1
for
123395624
sbi-r.1
for
8059801
sbi-r.1
for
8076299
bdi-r.1
for
100825772
cre-r.1
for
CHLRE_06g251800v5


Ortholog ID: 8250
Species sot sly nta nta ath gma gma bra bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC102583635 LOC101268826 LOC107760689 LOC107783617 EMB1968 LOC100798331 LOC100788329 LOC103873011 LOC103835735 LOC100245502 LOC7460974 LOC11414806 LOC121218260 LOC107901388 LOC106425967 LOC106347378 LOC102616275 LOC4351654 LOC100282197 LOC123120069 LOC123111058 LOC123102840 LOC123395624 LOC8059801 LOC8076299 LOC100825772 CHLRE_06g251800v5
Function* replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2-like ATPase family associated with various cellular activities (AAA) replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 4-like replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 2-like replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03040 Spliceosome 2
sot04144 Endocytosis 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04120 Ubiquitin mediated proteolysis 4
nta03060 Protein export 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03040 Spliceosome 5
nta03060 Protein export 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 8
ath03030 DNA replication 7
ath03420 Nucleotide excision repair 6
ath03430 Mismatch repair 6
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 6
gma03030 DNA replication 5
gma03410 Base excision repair 5
gma03420 Nucleotide excision repair 5
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03430 Mismatch repair 6
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 6
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 5
vvi03410 Base excision repair 4
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03030 DNA replication 3
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03420 Nucleotide excision repair 4
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03040 Spliceosome 3
cit03018 RNA degradation 2
cit04120 Ubiquitin mediated proteolysis 2
cit00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 4
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
zma03083 Polycomb repressive complex 2
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 9
tae03030 DNA replication 8
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 7
tae03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae03410 Base excision repair 9
tae03420 Nucleotide excision repair 9
tae03430 Mismatch repair 9
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03410 Base excision repair 8
tae03420 Nucleotide excision repair 8
tae03430 Mismatch repair 8
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03030 DNA replication 4
sbi03410 Base excision repair 4
sbi03420 Nucleotide excision repair 4
sbi03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03410 Base excision repair 5
cre03420 Nucleotide excision repair 5
cre03430 Mismatch repair 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102583635 101268826 107760689 107783617 838771 100798331 100788329 103873011 103835735 100245502 7460974 11414806 121218260 107901388 106425967 106347378 102616275 4351654 100282197 123120069 123111058 123102840 123395624 8059801 8076299 100825772 5722185
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