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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8076299   replication factor C subunit 2 
 zma-u.5   100282197   replication factor C subunit 2 
 osa-u.5   4351654   replication factor C subunit 2-like 
 ath-u.5   EMB1968   ATPase family associated with various cellular activities (AAA) 
 gma-u.5   100798331   replication factor C subunit 2 
 gma-u.5   100788329   replication factor C subunit 2 
 sly-u.5   101268826   replication factor C subunit 2 
 vvi-u.5   100245502   replication factor C subunit 4 
 ppo-u.5   7460974   replication factor C subunit 2 
 mtr-u.5   11414806   replication factor C subunit 2 

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Top 50 coexpressed genes to 8076299 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8076299 (sbi-r.1 coexpression data)

CoexMap"8076299"


sbiLOC8076299 | Entrez gene ID : 8076299      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03030 [list] [network] DNA replication (53 genes)
sbi03410 [list] [network] Base excision repair (51 genes)
sbi03420 [list] [network] Nucleotide excision repair (89 genes)
sbi03430 [list] [network] Mismatch repair (39 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (88 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (318 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (15 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (15 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (434 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1849 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2084 genes)  IEA  
Protein XP_002441912.1 [sequence] [blastp]
XP_021302394.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  cysk_nucl 1,  mito 1,  pero 1  (predict for XP_002441912.1)
cyto 4,  chlo 3,  nucl 1,  cysk_nucl 1,  mito 1,  pero 1  (predict for XP_021302394.1)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for XP_002441912.1)
other 5,  mito 3  (predict for XP_021302394.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8076299

.
zma-u.5
for
100282197

.
osa-u.5
for
4351654

.
ath-u.5
for
EMB1968

.
gma-u.5
for
100798331

.
gma-u.5
for
100788329

.
sly-u.5
for
101268826

.
vvi-u.5
for
100245502

.
ppo-u.5
for
7460974

.
mtr-u.5
for
11414806

.


Ortholog ID: 8250
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol EMB1968 LOC100788329 LOC100798331 LOC101268826 LOC4351654 LOC100282197 LOC103835735 LOC103873011 LOC100245502 LOC7460974 LOC11414806 LOC123102840 LOC123111058 LOC123395624 LOC107901388 LOC121218260 LOC106425967 LOC106347378 CHLRE_06g251800v5 LOC8076299 LOC8059801 LOC102583635 LOC102616275 LOC100825772 LOC107760689 LOC107783617
Function* ATPase family associated with various cellular activities (AAA) replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2-like replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 4 replication factor C subunit 4-like replication factor C subunit 4 uncharacterized protein replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 4 replication factor C subunit 2 replication factor C subunit 2 replication factor C subunit 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 8
ath03030 DNA replication 7
ath03420 Nucleotide excision repair 6
ath03430 Mismatch repair 6
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03410 Base excision repair 6
gma03420 Nucleotide excision repair 6
gma03430 Mismatch repair 6
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03430 Mismatch repair 6
gma03030 DNA replication 5
gma03410 Base excision repair 5
gma03420 Nucleotide excision repair 5
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 4
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03410 Base excision repair 3
zma03420 Nucleotide excision repair 3
zma03083 Polycomb repressive complex 2
zma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03430 Mismatch repair 6
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 5
vvi03410 Base excision repair 4
vvi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03030 DNA replication 3
ppo03410 Base excision repair 3
ppo03420 Nucleotide excision repair 3
ppo03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03410 Base excision repair 8
tae03420 Nucleotide excision repair 8
tae03430 Mismatch repair 8
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 9
tae03410 Base excision repair 9
tae03420 Nucleotide excision repair 9
tae03430 Mismatch repair 9
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03030 DNA replication 2
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03420 Nucleotide excision repair 4
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 8
cre03410 Base excision repair 5
cre03420 Nucleotide excision repair 5
cre03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03030 DNA replication 4
sbi03410 Base excision repair 4
sbi03420 Nucleotide excision repair 4
sbi03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot03040 Spliceosome 2
sot04144 Endocytosis 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03040 Spliceosome 3
cit03018 RNA degradation 2
cit04120 Ubiquitin mediated proteolysis 2
cit00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04120 Ubiquitin mediated proteolysis 4
nta03060 Protein export 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
nta03040 Spliceosome 5
nta03060 Protein export 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838771 100788329 100798331 101268826 4351654 100282197 103835735 103873011 100245502 7460974 11414806 123102840 123111058 123395624 107901388 121218260 106425967 106347378 5722185 8076299 8059801 102583635 102616275 100825772 107760689 107783617
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