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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102602721   protein ROOT PRIMORDIUM DEFECTIVE 1 
 sly-u.5   101257259   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107784352   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 nta-r.1   107763049   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like 
 ath-u.5   AT4G08940   Ubiquitin carboxyl-terminal hydrolase family protein 
 gma-u.5   100813429   protein WHAT'S THIS FACTOR 1, chloroplastic 
 gma-u.5   100809565   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bra-r.6   103838806   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 vvi-u.5   100257435   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7495160   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-u.5   25489472   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106422085   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 bna-r.1   106429566   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 cit-r.1   102627246   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 osa-u.5   4347348   protein WHAT'S THIS FACTOR 1, chloroplastic 
 zma-u.5   100279021   uncharacterized LOC100279021 
 hvu-r.1   123399055   protein WHAT'S THIS FACTOR 1, chloroplastic 
 sbi-r.1   8063739   protein ROOT PRIMORDIUM DEFECTIVE 1 

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Top 50 coexpressed genes to 102602721 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102602721 (sot-r.1 coexpression data)

CoexMap"102602721"


sotLOC102602721 | Entrez gene ID : 102602721    
Species sot sly nta ath gma bra vvi ppo mtr bna cit osa zma hvu sbi bdi cre ghi tae
Paralog 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
Protein XP_006367733.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 2,  chlo_mito 2  (predict for XP_006367733.2)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_006367733.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102602721
sly-u.5
for
101257259
nta-r.1
for
107784352
nta-r.1
for
107763049
ath-u.5
for
AT4G08940
gma-u.5
for
100813429
gma-u.5
for
100809565
bra-r.6
for
103838806
vvi-u.5
for
100257435
ppo-u.5
for
7495160
mtr-u.5
for
25489472
bna-r.1
for
106422085
bna-r.1
for
106429566
cit-r.1
for
102627246
osa-u.5
for
4347348
zma-u.5
for
100279021
hvu-r.1
for
123399055
sbi-r.1
for
8063739


Ortholog ID: 10845
Species sot sly nta nta ath gma gma bra vvi ppo mtr bna bna cit osa zma hvu sbi
Symbol LOC102602721 LOC101257259 LOC107784352 LOC107763049 AT4G08940 LOC100813429 LOC100809565 LOC103838806 LOC100257435 LOC7495160 LOC25489472 LOC106422085 LOC106429566 LOC102627246 LOC4347348 LOC100279021 LOC123399055 LOC8063739
Function* protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic uncharacterized LOC100279021 protein WHAT'S THIS FACTOR 1, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra01230 Biosynthesis of amino acids 3
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102602721 101257259 107784352 107763049 826472 100813429 100809565 103838806 100257435 7495160 25489472 106422085 106429566 102627246 4347348 100279021 123399055 8063739
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