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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25489472   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 mtr-r.5   25489472   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 gma-u.5   100813429   protein WHAT'S THIS FACTOR 1, chloroplastic 
 gma-u.5   100809565   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ppo-u.5   7495160   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 ath-u.5   AT4G08940   Ubiquitin carboxyl-terminal hydrolase family protein 
 vvi-u.5   100257435   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 sly-u.5   101257259   protein WHAT'S THIS FACTOR 1 homolog, chloroplastic 
 osa-u.5   4347348   protein WHAT'S THIS FACTOR 1, chloroplastic 
 zma-u.5   100279021   uncharacterized LOC100279021 

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Top 50 coexpressed genes to 25489472 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25489472 (mtr-u.5 coexpression data)

CoexMap"25489472"


mtrLOC25489472 | Entrez gene ID : 25489472      
Species mtr gma ppo ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
Protein XP_013460916.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for XP_013460916.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_013460916.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25489472

.
mtr-r.5
for
25489472

.
gma-u.5
for
100813429

.
gma-u.5
for
100809565

.
ppo-u.5
for
7495160

.
ath-u.5
for
AT4G08940

.
vvi-u.5
for
100257435

.
sly-u.5
for
101257259

.
osa-u.5
for
4347348

.
zma-u.5
for
100279021

.


Ortholog ID: 10845
Species ath gma gma sly osa zma bra vvi ppo mtr hvu bna bna sbi sot cit nta nta
Symbol AT4G08940 LOC100809565 LOC100813429 LOC101257259 LOC4347348 LOC100279021 LOC103838806 LOC100257435 LOC7495160 LOC25489472 LOC123399055 LOC106422085 LOC106429566 LOC8063739 LOC102602721 LOC102627246 LOC107763049 LOC107784352
Function* Ubiquitin carboxyl-terminal hydrolase family protein protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic uncharacterized LOC100279021 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein ROOT PRIMORDIUM DEFECTIVE 1 protein ROOT PRIMORDIUM DEFECTIVE 1 protein WHAT'S THIS FACTOR 1 homolog, chloroplastic protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra01230 Biosynthesis of amino acids 3
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
nta03018 RNA degradation 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826472 100809565 100813429 101257259 4347348 100279021 103838806 100257435 7495160 25489472 123399055 106422085 106429566 8063739 102602721 102627246 107763049 107784352
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