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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102604653   exosome complex component RRP4 
 sly-u.5   101267058   exosome complex component RRP4 homolog 
 ath-u.5   RRP4   ribosomal RNA processing 4 
 gma-u.5   100776358   exosome complex component RRP4 homolog 
 vvi-u.5   100244305   exosome complex component RRP4 homolog 
 ppo-u.5   7462802   exosome complex component RRP4 homolog 
 mtr-u.5   11418314   exosome complex component RRP4 homolog 
 osa-u.5   4336421   exosome complex component RRP4 homolog 
 zma-u.5   100216860   uncharacterized LOC100216860 

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Top 50 coexpressed genes to 102604653 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102604653 (sot-r.1 coexpression data)

CoexMap"102604653"


sotLOC102604653 | Entrez gene ID : 102604653      
Species sot sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot03018 [list] [network] RNA degradation (117 genes)
GO BP
GO:0071034 [list] [network] CUT catabolic process  (4 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (7 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (8 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (8 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (8 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (9 genes)  IEA  
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (24 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (9 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (12 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1335 genes)  IEA  
Protein XP_006358436.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  nucl 2  (predict for XP_006358436.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_006358436.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102604653

.
sly-u.5
for
101267058

.
ath-u.5
for
RRP4

.
gma-u.5
for
100776358

.
vvi-u.5
for
100244305

.
ppo-u.5
for
7462802

.
mtr-u.5
for
11418314

.
osa-u.5
for
4336421

.
zma-u.5
for
100216860

.


Ortholog ID: 7430
Species ath gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol RRP4 LOC100776358 LOC101267058 LOC4336421 LOC100216860 LOC103844513 LOC100244305 LOC7462802 LOC11418314 LOC123158903 LOC123410114 LOC107921000 LOC107890797 LOC106401423 LOC106422939 CHLRE_12g496450v5 LOC8082540 LOC102604653 LOC102607744 LOC100821067 LOC100831931 LOC107816261 LOC107762841
Function* ribosomal RNA processing 4 exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog uncharacterized LOC100216860 exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog uncharacterized protein exosome complex component RRP4 homolog exosome complex component RRP4 exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03018 RNA degradation 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03083 Polycomb repressive complex 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
bna03018 RNA degradation 6
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 9
bna03018 RNA degradation 8
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 6
cre03420 Nucleotide excision repair 4
cre03018 RNA degradation 3
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839521 100776358 101267058 4336421 100216860 103844513 100244305 7462802 11418314 123158903 123410114 107921000 107890797 106401423 106422939 5727910 8082540 102604653 102607744 100821067 100831931 107816261 107762841
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