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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106422939   exosome complex component RRP4 homolog 
 bna-r.1   106401423   exosome complex component RRP4 homolog 
 bra-r.6   103844513   exosome complex component RRP4 homolog 
 ath-u.5   RRP4   ribosomal RNA processing 4 
 ghi-r.1   107890797   exosome complex component RRP4 homolog 
 ghi-r.1   107914407   exosome complex component RRP4 homolog 
 ghi-r.1   107914474   exosome complex component RRP4 homolog 
 cit-r.1   102607744   exosome complex component RRP4 homolog 
 gma-u.5   100776358   exosome complex component RRP4 homolog 
 vvi-u.5   100244305   exosome complex component RRP4 homolog 
 ppo-u.5   7462802   exosome complex component RRP4 homolog 
 mtr-u.5   11418314   exosome complex component RRP4 homolog 
 sly-u.5   101267058   exosome complex component RRP4 homolog 
 sot-r.1   102604653   exosome complex component RRP4 
 nta-r.1   107816261   exosome complex component RRP4 homolog 
 nta-r.1   107762841   exosome complex component RRP4 homolog 
 osa-u.5   4336421   exosome complex component RRP4 homolog 
 zma-u.5   100216860   uncharacterized LOC100216860 
 hvu-r.1   123410114   exosome complex component RRP4 homolog 
 sbi-r.1   8082540   exosome complex component RRP4 homolog 
 bdi-r.1   100831931   exosome complex component RRP4 homolog 
 bdi-r.1   100821067   exosome complex component RRP4 homolog 
 cre-r.1   CHLRE_12g496450v5   uncharacterized protein 

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Top 50 coexpressed genes to 106422939 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106422939 (bna-r.1 coexpression data)

CoexMap"106422939"


bnaLOC106422939 | Entrez gene ID : 106422939    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 2 1 1 3 1 1 1 1 1 1 1 2 1 1 1 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03018 [list] [network] RNA degradation (380 genes)
GO BP
GO:0071034 [list] [network] CUT catabolic process  (14 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (25 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (25 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (25 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (26 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (27 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (28 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (40 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013719181.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  mito 2,  cyto 1,  golg_plas 1  (predict for XP_013719181.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_013719181.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106422939
bna-r.1
for
106401423
bra-r.6
for
103844513
ath-u.5
for
RRP4
ghi-r.1
for
107890797
ghi-r.1
for
107914407
ghi-r.1
for
107914474
cit-r.1
for
102607744
gma-u.5
for
100776358
vvi-u.5
for
100244305
ppo-u.5
for
7462802
mtr-u.5
for
11418314
sly-u.5
for
101267058
sot-r.1
for
102604653
nta-r.1
for
107816261
nta-r.1
for
107762841
osa-u.5
for
4336421
zma-u.5
for
100216860
hvu-r.1
for
123410114
sbi-r.1
for
8082540
bdi-r.1
for
100831931
bdi-r.1
for
100821067
cre-r.1
for
CHLRE_12g496450v5


Ortholog ID: 7430
Species bna bna bra ath ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae hvu sbi bdi bdi cre
Symbol LOC106422939 LOC106401423 LOC103844513 RRP4 LOC107890797 LOC107914407 LOC107921000 LOC102607744 LOC100776358 LOC100244305 LOC7462802 LOC11418314 LOC101267058 LOC102604653 LOC107816261 LOC107762841 LOC4336421 LOC100216860 LOC123158903 LOC123410114 LOC8082540 LOC100831931 LOC100821067 CHLRE_12g496450v5
Function* exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog ribosomal RNA processing 4 exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog uncharacterized LOC100216860 exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog exosome complex component RRP4 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 9
bna03018 RNA degradation 8
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
bna03018 RNA degradation 6
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 4
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03018 RNA degradation 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03083 Polycomb repressive complex 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 6
cre03420 Nucleotide excision repair 4
cre03018 RNA degradation 3
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106422939 106401423 103844513 839521 107890797 107914407 107921000 102607744 100776358 100244305 7462802 11418314 101267058 102604653 107816261 107762841 4336421 100216860 123158903 123410114 8082540 100831931 100821067 5727910
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