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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1  102608673  pentatricopeptide repeat-containing protein At4g14850 
 ath-u.5  LOI1  Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5  100778632  pentatricopeptide repeat-containing protein At4g14850 
 vvi-u.5  100261298  pentatricopeptide repeat-containing protein At4g14850 
 mtr-u.5  25485202  pentatricopeptide repeat-containing protein At4g14850 
 mtr-u.5  11431827  pentatricopeptide repeat-containing protein At4g14850 
 sly-u.5  101260676  pentatricopeptide repeat-containing protein At4g14850 
 osa-u.5  4350793  pentatricopeptide repeat-containing protein At4g14850 

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Top 50 coexpressed genes to 102608673 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102608673 (cit-r.1 coexpression data)

CoexMap"102608673"


citLOC102608673 | Entrez gene ID : 102608673
Species cit ath gma vvi mtr sly osa bdi hvu bra bna ppo sbi ghi sot nta cre tae zma
Paralog 1 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (369 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006489403.2 [sequence] [blastp]
XP_024947997.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  cysk 1,  vacu 1,  E.R._vacu 1,  cysk_plas 1  (predict for XP_006489403.2)
cyto 6,  cysk 1,  vacu 1,  E.R._vacu 1,  cysk_plas 1  (predict for XP_024947997.2)
Subcellular
localization
TargetP
other 3  (predict for XP_006489403.2)
other 3  (predict for XP_024947997.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Reference

cit-r.1
for
102608673


ath-u.5
for
LOI1


gma-u.5
for
100778632


vvi-u.5
for
100261298


mtr-u.5
for
25485202


mtr-u.5
for
11431827


sly-u.5
for
101260676


osa-u.5
for
4350793



Ortholog ID: 10854
Species cit ath bra ghi ghi bna bna gma vvi mtr mtr sly sot nta nta osa tae hvu sbi bdi
Symbol LOC102608673 LOI1 LOC103868345 LOC107955636 LOC107954871 LOC106411027 LOC106402954 LOC100778632 LOC100261298 LOC25485202 LOC11431827 LOC101260676 LOC102578590 LOC107796050 LOC107767133 LOC4350793 LOC123132442 LOC123405180 LOC8081315 LOC100823088
Function* pentatricopeptide repeat-containing protein At4g14850 Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850-like pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850-like pentatricopeptide repeat-containing protein At4g14850-like pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850 pentatricopeptide repeat-containing protein At4g14850
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03020 RNA polymerase 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102608673 827142 103868345 107955636 107954871 106411027 106402954 100778632 100261298 25485202 11431827 101260676 102578590 107796050 107767133 4350793 123132442 123405180 8081315 100823088
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