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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102613600   auxin response factor 4 
 ath-u.5   ARF4   auxin response factor 4 
 bra-r.6   103845463   auxin response factor 4 
 ghi-r.1   107959261   auxin response factor 4 
 ghi-r.1   107906725   auxin response factor 4 
 ghi-r.1   107891491   auxin response factor 4 
 bna-r.1   106371606   auxin response factor 4 
 bna-r.1   125579214   auxin response factor 4-like 
 gma-u.5   100806870   auxin response factor 4-like 
 gma-u.5   100816621   auxin response factor 4 
 gma-u.5   100812909   auxin response factor 4 
 vvi-u.5   100243320   auxin response factor 4 
 ppo-u.5   7491142   auxin response factor 4 
 mtr-u.5   11416074   auxin response factor 4 
 mtr-u.5   11406453   auxin response factor 4 
 sly-u.5   ARF4   auxin response factor 4 
 sot-r.1   102602099   auxin response factor 4 
 nta-r.1   107826218   auxin response factor 4 
 nta-r.1   107785490   auxin response factor 4 

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Top 50 coexpressed genes to 102613600 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102613600 (cit-r.1 coexpression data)

CoexMap"102613600"


citLOC102613600 | Entrez gene ID : 102613600    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa bdi tae zma sbi hvu cre
Paralog 1 1 1 3 2 3 1 1 2 1 1 2 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit04075 [list] [network] Plant hormone signal transduction (346 genes)
GO BP
GO:0009725 [list] [network] response to hormone  (312 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1325 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2569 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1476 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006488135.1 [sequence] [blastp]
XP_006488136.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_006488135.1)
nucl 10  (predict for XP_006488136.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for XP_006488135.1)
other 6,  chlo 4  (predict for XP_006488136.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102613600
ath-u.5
for
ARF4
bra-r.6
for
103845463
ghi-r.1
for
107959261
ghi-r.1
for
107906725
ghi-r.1
for
107891491
bna-r.1
for
106371606
bna-r.1
for
125579214
gma-u.5
for
100806870
gma-u.5
for
100816621
gma-u.5
for
100812909
vvi-u.5
for
100243320
ppo-u.5
for
7491142
mtr-u.5
for
11416074
mtr-u.5
for
11406453
sly-u.5
for
ARF4
sot-r.1
for
102602099
nta-r.1
for
107826218
nta-r.1
for
107785490


Ortholog ID: 12017
Species cit ath bra ghi ghi ghi bna bna gma gma gma vvi ppo mtr mtr sly sot nta nta
Symbol LOC102613600 ARF4 LOC103845463 LOC107906725 LOC107891491 LOC107889252 LOC106371606 LOC125579214 LOC100806870 LOC100812909 LOC100783513 LOC100243320 LOC7491142 LOC11416074 LOC11406453 ARF4 LOC102602099 LOC107826218 LOC107785490
Function* auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4-like auxin response factor 4-like auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00460 Cyanoamino acid metabolism 4
vvi04075 Plant hormone signal transduction 3
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00910 Nitrogen metabolism 3
vvi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102613600 836166 103845463 107906725 107891491 107889252 106371606 125579214 100806870 100812909 100783513 100243320 7491142 11416074 11406453 778241 102602099 107826218 107785490
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