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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   ARF4   auxin response factor 4 
 sly-r.6   ARF4   auxin response factor 4 
 ath-u.5   ARF4   auxin response factor 4 
 gma-u.5   100816621   auxin response factor 4 
 gma-u.5   100812909   auxin response factor 4 
 gma-u.5   100806870   auxin response factor 4-like 
 vvi-u.5   100243320   auxin response factor 4 
 ppo-u.5   7491142   auxin response factor 4 
 mtr-u.5   11416074   auxin response factor 4 
 mtr-u.5   11406453   auxin response factor 4 

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Top 50 coexpressed genes to ARF4 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARF4 (sly-u.5 coexpression data)

CoexMap"778241"


slyARF4 | Entrez gene ID : 778241      
Species sly ath gma vvi ppo mtr sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 2 1 3 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04075 [list] [network] Plant hormone signal transduction (437 genes)
GO BP
GO:0009725 [list] [network] response to hormone  (341 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001233771.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001233771.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001233771.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
ARF4

.
sly-r.6
for
ARF4

.
ath-u.5
for
ARF4

.
gma-u.5
for
100816621

.
gma-u.5
for
100812909

.
gma-u.5
for
100806870

.
vvi-u.5
for
100243320

.
ppo-u.5
for
7491142

.
mtr-u.5
for
11416074

.
mtr-u.5
for
11406453

.


Ortholog ID: 12017
Species ath gma gma sly bra vvi ppo mtr mtr ghi ghi bna bna sot cit nta nta
Symbol ARF4 LOC100812909 LOC100783513 ARF4 LOC103845463 LOC100243320 LOC7491142 LOC11416074 LOC11406453 LOC107891491 LOC107889252 LOC106371606 LOC125579214 LOC102602099 LOC102613600 LOC107785490 LOC107826218
Function* auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4-like auxin response factor 4 auxin response factor 4 auxin response factor 4 auxin response factor 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00460 Cyanoamino acid metabolism 4
vvi04075 Plant hormone signal transduction 3
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00910 Nitrogen metabolism 3
vvi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836166 100812909 100783513 778241 103845463 100243320 7491142 11416074 11406453 107891491 107889252 106371606 125579214 102602099 102613600 107785490 107826218
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