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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102614532   homogentisate phytyltransferase 1, chloroplastic 
 ath-u.5   HPT1   homogentisate phytyltransferase 1 
 bra-r.6   103828352   homogentisate phytyltransferase 1, chloroplastic 
 ghi-r.1   121225293   homogentisate phytyltransferase 1, chloroplastic 
 bna-r.1   106435342   homogentisate phytyltransferase 1, chloroplastic 
 bna-r.1   106357630   homogentisate phytyltransferase 1, chloroplastic 
 gma-u.5   HPT1   homogentisate phytylprenyltransferase 
 gma-u.5   VTE2-1   homogentisate phytyltransferase 1, chloroplastic-like 
 vvi-u.5   HGGT   homogentisate geranylgeranyl transferase 
 ppo-u.5   7488957   homogentisate phytyltransferase 1, chloroplastic 
 mtr-u.5   11424708   homogentisate phytyltransferase 1, chloroplastic 
 sly-u.5   101263529   homogentisate phytyltransferase 1, chloroplastic 
 sot-r.1   102582366   homogentisate phytyltransferase 1, chloroplastic 
 nta-r.1   107769769   homogentisate phytyltransferase 1, chloroplastic-like 
 osa-u.5   4341727   probable homogentisate phytyltransferase 1, chloroplastic 
 zma-u.5   100192568   homogentisate geranylgeranyltransferase, chloroplastic 
 zma-u.5   100272493   Small RNA degrading nuclease 3 
 zma-u.5   732789   homogentisate phytyltransferase VTE2-1 
 tae-r.2   123149361   probable homogentisate phytyltransferase 1, chloroplastic 
 tae-r.2   780685   probable homogentisate phytyltransferase 1, chloroplastic 
 tae-r.2   543094   homogentisate geranylgeranyltransferase-like 
 hvu-r.1   123410571   probable homogentisate phytyltransferase 1, chloroplastic 
 sbi-r.1   8058455   probable homogentisate phytyltransferase 1, chloroplastic 
 bdi-r.1   100821283   probable homogentisate phytyltransferase 1, chloroplastic 
 cre-r.1   CHLRE_09g414000v5   uncharacterized protein 

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Top 50 coexpressed genes to 102614532 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102614532 (cit-r.1 coexpression data)

CoexMap"102614532"


citLOC102614532 | Entrez gene ID : 102614532    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 1 1 2 2 1 1 1 1 1 1 1 3 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (67 genes)
cit01240 [list] [network] Biosynthesis of cofactors (245 genes)
GO BP
GO CC
GO:0016020 [list] [network] membrane  (2752 genes)  IEA  
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (39 genes)  IEA  
Protein XP_006474203.1 [sequence] [blastp]
XP_006474206.1 [sequence] [blastp]
XP_024953524.1 [sequence] [blastp]
XP_052290210.1 [sequence] [blastp]
XP_052290211.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 4,  plas 4,  E.R. 1  (predict for XP_006474203.1)
vacu 5,  plas 4  (predict for XP_006474206.1)
plas 5,  vacu 4  (predict for XP_024953524.1)
plas 6,  vacu 3,  nucl_plas 3,  golg_plas 3,  cysk_plas 3,  mito_plas 3,  cyto_plas 3  (predict for XP_052290210.1)
plas 7,  vacu 1,  chlo 1,  E.R. 1  (predict for XP_052290211.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_006474203.1)
other 5  (predict for XP_006474206.1)
other 4,  scret 3  (predict for XP_024953524.1)
other 2  (predict for XP_052290210.1)
other 2  (predict for XP_052290211.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102614532
ath-u.5
for
HPT1
bra-r.6
for
103828352
ghi-r.1
for
121225293
bna-r.1
for
106435342
bna-r.1
for
106357630
gma-u.5
for
HPT1
gma-u.5
for
VTE2-1
vvi-u.5
for
HGGT
ppo-u.5
for
7488957
mtr-u.5
for
11424708
sly-u.5
for
101263529
sot-r.1
for
102582366
nta-r.1
for
107769769
osa-u.5
for
4341727
zma-u.5
for
100192568
zma-u.5
for
100272493
zma-u.5
for
732789
tae-r.2
for
123149361
tae-r.2
for
780685
tae-r.2
for
543094
hvu-r.1
for
123410571
sbi-r.1
for
8058455
bdi-r.1
for
100821283
cre-r.1
for
CHLRE_09g414000v5


Ortholog ID: 4341
Species cit ath bra ghi bna bna gma gma vvi ppo mtr sly sot nta osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol LOC102614532 HPT1 LOC103828352 LOC121225293 LOC106435342 LOC106357630 HPT1 VTE2-1 HGGT LOC7488957 LOC11424708 LOC101263529 LOC102582366 LOC107769769 LOC4341727 LOC100192568 LOC100272493 LOC732789 LOC123149361 LOC123165791 LOC123166512 LOC123410571 LOC8058455 LOC100821283 CHLRE_09g414000v5
Function* homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1 homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytylprenyltransferase homogentisate phytyltransferase 1, chloroplastic-like homogentisate geranylgeranyl transferase homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic-like probable homogentisate phytyltransferase 1, chloroplastic homogentisate geranylgeranyltransferase, chloroplastic Small RNA degrading nuclease 3 homogentisate phytyltransferase VTE2-1 probable homogentisate phytyltransferase 1, chloroplastic probable homogentisate phytyltransferase 1, chloroplastic homogentisate geranylgeranyltransferase-like probable homogentisate phytyltransferase 1, chloroplastic probable homogentisate phytyltransferase 1, chloroplastic probable homogentisate phytyltransferase 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 5
gma01200 Carbon metabolism 3
gma00100 Steroid biosynthesis 3
gma00410 beta-Alanine metabolism 3
gma00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 5
gma00740 Riboflavin metabolism 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi01230 Biosynthesis of amino acids 3
vvi00670 One carbon pool by folate 2
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 3
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
nta01240 Biosynthesis of cofactors 3
nta00450 Selenocompound metabolism 2
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 5
zma01200 Carbon metabolism 4
zma00410 beta-Alanine metabolism 2
zma00640 Propanoate metabolism 2
zma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00480 Glutathione metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03020 RNA polymerase 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 4
bdi00230 Purine metabolism 3
bdi00300 Lysine biosynthesis 3
bdi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
cre01240 Biosynthesis of cofactors 3
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102614532 816412 103828352 121225293 106435342 106357630 732648 100819685 100232967 7488957 11424708 101263529 102582366 107769769 4341727 100192568 100272493 732789 123149361 123165791 123166512 123410571 8058455 100821283 5722338
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