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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   780685   probable homogentisate phytyltransferase 1, chloroplastic 
 osa-u.5   4341727   probable homogentisate phytyltransferase 1, chloroplastic 
 zma-u.5   100192568   homogentisate geranylgeranyltransferase, chloroplastic 
 zma-u.5   103638712   homogentisate geranylgeranyltransferase, chloroplastic 
 ath-u.5   HPT1   homogentisate phytyltransferase 1 
 gma-u.5   HPT1   homogentisate phytylprenyltransferase 
 gma-u.5   VTE2-1   homogentisate phytyltransferase 1, chloroplastic-like 
 sly-u.5   101263529   homogentisate phytyltransferase 1, chloroplastic 
 vvi-u.5   HGGT   homogentisate geranylgeranyl transferase 
 ppo-u.5   7488957   homogentisate phytyltransferase 1, chloroplastic 
 mtr-u.5   11424708   homogentisate phytyltransferase 1, chloroplastic 

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Top 50 coexpressed genes to 780685 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 780685 (tae-r.2 coexpression data)

CoexMap"780685"


taeLOC780685 | Entrez gene ID : 780685    
Species tae osa zma ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot bna ghi
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG taes00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (190 genes)
taes01240 [list] [network] Biosynthesis of cofactors (838 genes)
GO BP
GO CC
GO:0016020 [list] [network] membrane  (10843 genes)  IEA  
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (115 genes)  IEA  
Protein XP_044433045.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  plas 4,  mito 1,  E.R. 1,  pero 1  (predict for XP_044433045.1)
Subcellular
localization
TargetP
mito 7,  chlo 3  (predict for XP_044433045.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
780685

.
osa-u.5
for
4341727

.
zma-u.5
for
100192568

.
zma-u.5
for
103638712

.
ath-u.5
for
HPT1

.
gma-u.5
for
HPT1

.
gma-u.5
for
VTE2-1

.
sly-u.5
for
101263529

.
vvi-u.5
for
HGGT

.
ppo-u.5
for
7488957

.
mtr-u.5
for
11424708

.


Ortholog ID: 4341
Species ath gma gma sly zma zma bra vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi
Symbol HPT1 VTE2-1 HPT1 LOC101263529 LOC100192568 LOC100272493 LOC103828352 HGGT LOC7488957 LOC11424708 LOC123166512 LOC123149361 LOC123410571 LOC121225293 LOC106435342 LOC106357630 CHLRE_09g414000v5 LOC8058455 LOC102582366 LOC102614532 LOC100821283
Function* homogentisate phytyltransferase 1 homogentisate phytyltransferase 1, chloroplastic-like homogentisate phytylprenyltransferase homogentisate phytyltransferase 1, chloroplastic homogentisate geranylgeranyltransferase, chloroplastic Small RNA degrading nuclease 3 homogentisate phytyltransferase 1, chloroplastic homogentisate geranylgeranyl transferase homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate geranylgeranyltransferase-like probable homogentisate phytyltransferase 1, chloroplastic probable homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic uncharacterized protein probable homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic homogentisate phytyltransferase 1, chloroplastic probable homogentisate phytyltransferase 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 5
gma00740 Riboflavin metabolism 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 5
gma01200 Carbon metabolism 3
gma00100 Steroid biosynthesis 3
gma00410 beta-Alanine metabolism 3
gma00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi01230 Biosynthesis of amino acids 3
vvi00670 One carbon pool by folate 2
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 3
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
cre01240 Biosynthesis of cofactors 3
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03020 RNA polymerase 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 4
bdi00230 Purine metabolism 3
bdi00300 Lysine biosynthesis 3
bdi00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816412 100819685 732648 101263529 100192568 100272493 103828352 100232967 7488957 11424708 123166512 123149361 123410571 121225293 106435342 106357630 5722338 8058455 102582366 102614532 100821283
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