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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102618357   cleavage stimulation factor subunit 50 
 ath-u.5   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103860555   cleavage stimulation factor subunit 50 
 ghi-r.1   107953492   cleavage stimulation factor subunit 50 
 ghi-r.1   121202981   cleavage stimulation factor subunit 50 
 bna-r.1   106439961   cleavage stimulation factor subunit 50 
 bna-r.1   106410620   cleavage stimulation factor subunit 50 
 gma-u.5   100809908   cleavage stimulation factor subunit 50 
 vvi-u.5   100267233   cleavage stimulation factor subunit 50 
 mtr-u.5   11419557   cleavage stimulation factor subunit 50 
 mtr-u.5   11437498   cleavage stimulation factor subunit 50 
 sly-u.5   101264599   cleavage stimulation factor subunit 50 
 sot-r.1   102583224   cleavage stimulation factor subunit 50 
 nta-r.1   107774759   cleavage stimulation factor subunit 50 
 nta-r.1   107779660   cleavage stimulation factor subunit 50 
 osa-u.5   4334149   cleavage stimulation factor subunit 50 
 zma-u.5   100192488   uncharacterized LOC100192488 
 tae-r.2   123122868   cleavage stimulation factor subunit 50 
 tae-r.2   123113357   cleavage stimulation factor subunit 50 
 tae-r.2   123105058   cleavage stimulation factor subunit 50 
 hvu-r.1   123452288   cleavage stimulation factor subunit 50 
 sbi-r.1   110430976   cleavage stimulation factor subunit 50 

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Top 50 coexpressed genes to 102618357 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102618357 (cit-r.1 coexpression data)

CoexMap"102618357"


citLOC102618357 | Entrez gene ID : 102618357    
Species cit ath bra ghi bna gma vvi mtr sly sot nta osa zma tae hvu sbi ppo bdi cre
Paralog 1 1 1 2 2 1 1 2 1 1 2 1 1 3 1 1 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03015 [list] [network] mRNA surveillance pathway (106 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (12 genes)  IEA  
GO CC
GO:0005848 [list] [network] mRNA cleavage stimulating factor complex  (1 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006485521.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cysk 4,  chlo 1,  nucl 1,  pero 1,  chlo_mito 1  (predict for XP_006485521.2)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_006485521.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102618357
ath-u.5
for
AT5G60940
bra-r.6
for
103860555
ghi-r.1
for
107953492
ghi-r.1
for
121202981
bna-r.1
for
106439961
bna-r.1
for
106410620
gma-u.5
for
100809908
vvi-u.5
for
100267233
mtr-u.5
for
11419557
mtr-u.5
for
11437498
sly-u.5
for
101264599
sot-r.1
for
102583224
nta-r.1
for
107774759
nta-r.1
for
107779660
osa-u.5
for
4334149
zma-u.5
for
100192488
tae-r.2
for
123122868
tae-r.2
for
123113357
tae-r.2
for
123105058
hvu-r.1
for
123452288
sbi-r.1
for
110430976


Ortholog ID: 11768
Species cit ath bra ghi ghi bna bna gma vvi mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi
Symbol LOC102618357 AT5G60940 LOC103860555 LOC107953492 LOC121202981 LOC106439961 LOC106410620 LOC100809908 LOC100267233 LOC11419557 LOC11437498 LOC101264599 LOC102583224 LOC107774759 LOC107779660 LOC4334149 LOC100192488 LOC123122868 LOC123113357 LOC123105058 LOC123452288 LOC110430976
Function* cleavage stimulation factor subunit 50 Transducin/WD40 repeat-like superfamily protein cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 uncharacterized LOC100192488 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00770 Pantothenate and CoA biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03015 mRNA surveillance pathway 2
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
ghi03040 Spliceosome 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 5
bna00860 Porphyrin metabolism 5
bna01240 Biosynthesis of cofactors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 5
bna00860 Porphyrin metabolism 5
bna01240 Biosynthesis of cofactors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03022 Basal transcription factors 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00650 Butanoate metabolism 3
tae00062 Fatty acid elongation 3
tae01212 Fatty acid metabolism 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03015 mRNA surveillance pathway 3
tae00650 Butanoate metabolism 3
tae00062 Fatty acid elongation 3
tae01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00650 Butanoate metabolism 3
tae00062 Fatty acid elongation 3
tae01212 Fatty acid metabolism 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102618357 836215 103860555 107953492 121202981 106439961 106410620 100809908 100267233 11419557 11437498 101264599 102583224 107774759 107779660 4334149 100192488 123122868 123113357 123105058 123452288 110430976
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