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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-m.9   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   AT5G60940   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100809908   cleavage stimulation factor subunit 50 
 vvi-u.5   100267233   cleavage stimulation factor subunit 50 
 mtr-u.5   11437498   cleavage stimulation factor subunit 50 
 mtr-u.5   11419557   cleavage stimulation factor subunit 50 
 sly-u.5   101264599   cleavage stimulation factor subunit 50 
 osa-u.5   4334149   cleavage stimulation factor subunit 50 
 zma-u.5   100192488   uncharacterized LOC100192488 

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Top 50 coexpressed genes to AT5G60940 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G60940 (ath-u.5 coexpression data)

CoexMap"836215"


athAT5G60940 | Entrez gene ID : 836215      
Species ath gma vvi mtr sly osa zma ppo hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 9 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0031124 [list] [network] mRNA 3'-end processing  (9 genes)  IEA  
GO CC
GO:0005848 [list] [network] mRNA cleavage stimulating factor complex  (1 genes)  IEA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_200902.1 [sequence] [blastp]
NP_974972.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 8,  cyto 1  (predict for NP_200902.1)
cyto 6,  chlo 4  (predict for NP_974972.1)
Subcellular
localization
TargetP
other 7  (predict for NP_200902.1)
chlo 5,  other 3  (predict for NP_974972.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G60940

.
ath-r.7
for
AT5G60940

.
ath-m.9
for
AT5G60940

.
ath-e.2
for
AT5G60940

.
ath-m.4.bio
for
AT5G60940

.
ath-m.4.hor
for
AT5G60940

.
ath-m.4.lig
for
AT5G60940

.
ath-m.4.str
for
AT5G60940

.
ath-m.4.tis
for
AT5G60940

.
gma-u.5
for
100809908

.
vvi-u.5
for
100267233

.
mtr-u.5
for
11437498

.
mtr-u.5
for
11419557

.
sly-u.5
for
101264599

.
osa-u.5
for
4334149

.
zma-u.5
for
100192488

.


Ortholog ID: 11768
Species ath gma sly osa zma bra vvi mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit nta nta
Symbol AT5G60940 LOC100809908 LOC101264599 LOC4334149 LOC100192488 LOC103860555 LOC100267233 LOC11419557 LOC11437498 LOC123105058 LOC123113357 LOC123452288 LOC121202981 LOC107953492 LOC106439961 LOC106410620 LOC110430976 LOC102583224 LOC102618357 LOC107774759 LOC107779660
Function* Transducin/WD40 repeat-like superfamily protein cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 uncharacterized LOC100192488 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50 cleavage stimulation factor subunit 50
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00770 Pantothenate and CoA biosynthesis 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 3
gma03015 mRNA surveillance pathway 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03022 Basal transcription factors 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae00650 Butanoate metabolism 3
tae00062 Fatty acid elongation 3
tae01212 Fatty acid metabolism 3
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03015 mRNA surveillance pathway 3
tae00650 Butanoate metabolism 3
tae00062 Fatty acid elongation 3
tae01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
ghi03040 Spliceosome 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
ghi03015 mRNA surveillance pathway 2
ghi03272 Virion - Hepatitis viruses 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 5
bna00860 Porphyrin metabolism 5
bna01240 Biosynthesis of cofactors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 5
bna00860 Porphyrin metabolism 5
bna01240 Biosynthesis of cofactors 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836215 100809908 101264599 4334149 100192488 103860555 100267233 11419557 11437498 123105058 123113357 123452288 121202981 107953492 106439961 106410620 110430976 102583224 102618357 107774759 107779660
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