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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   RAE1   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103830448   protein RAE1 
 bra-r.6   103832465   protein RAE1 
 bra-r.6   103853226   protein RAE1 
 ghi-r.1   107958446   protein RAE1 
 ghi-r.1   107906437   protein RAE1 
 bna-r.1   106430699   protein RAE1 
 bna-r.1   125604553   protein RAE1 
 bna-r.1   106353377   protein RAE1-like 
 gma-u.5   100527204   protein RAE1 
 gma-u.5   100780721   rae1-like protein At1g80670-like 
 gma-u.5   100803005   protein RAE1 
 vvi-u.5   100250245   protein RAE1 
 vvi-u.5   100250787   protein RAE1 
 ppo-u.5   7478293   protein RAE1 
 ppo-u.5   7490684   protein RAE1 
 mtr-u.5   25501437   protein RAE1 
 mtr-u.5   11428530   protein RAE1 
 sly-u.5   101247869   protein RAE1 
 sot-r.1   102590604   protein RAE1 
 nta-r.1   107825929   protein RAE1-like 
 nta-r.1   107767524   protein RAE1 
 osa-u.5   4344798   protein RAE1 
 osa-u.5   4326570   protein RAE1 
 zma-u.5   100283675   rae1-like protein 
 zma-u.5   100286267   rae1-like protein 
 tae-r.2   123104522   protein RAE1 
 tae-r.2   123070192   protein RAE1 
 tae-r.2   123078634   protein RAE1 
 hvu-r.1   123443201   protein RAE1 
 hvu-r.1   123443939   protein RAE1-like 
 sbi-r.1   110437059   protein RAE1 
 sbi-r.1   8058208   protein RAE1 
 bdi-r.1   100846303   protein RAE1 
 bdi-r.1   100830773   protein RAE1 
 cre-r.1   CHLRE_06g278097v5   uncharacterized protein 

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Top 50 coexpressed genes to RAE1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RAE1 (ath-u.5 coexpression data)

CoexMap"102621900"


citLOC102621900 | Entrez gene ID : 102621900    
Species ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 1 3 2 3 3 2 2 2 1 1 2 2 2 3 2 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03013 [list] [network] Nucleocytoplasmic transport (96 genes)
GO BP
GO:0000972 [list] [network] transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery  (8 genes)  IEA  
GO:0006405 [list] [network] RNA export from nucleus  (40 genes)  IEA  
GO CC
GO:0005643 [list] [network] nuclear pore  (37 genes)  IEA  
GO MF
GO:0043130 [list] [network] ubiquitin binding  (49 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
Protein XP_052300243.1 [sequence] [blastp]
XP_052300244.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto 3  (predict for XP_052300243.1)
nucl 4,  chlo 3,  cyto 3  (predict for XP_052300244.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_052300243.1)
chlo 9  (predict for XP_052300244.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
RAE1
bra-r.6
for
103830448
bra-r.6
for
103832465
bra-r.6
for
103853226
ghi-r.1
for
107958446
ghi-r.1
for
107906437
bna-r.1
for
106430699
bna-r.1
for
125604553
bna-r.1
for
106353377
gma-u.5
for
100527204
gma-u.5
for
100780721
gma-u.5
for
100803005
vvi-u.5
for
100250245
vvi-u.5
for
100250787
ppo-u.5
for
7478293
ppo-u.5
for
7490684
mtr-u.5
for
25501437
mtr-u.5
for
11428530
sly-u.5
for
101247869
sot-r.1
for
102590604
nta-r.1
for
107825929
nta-r.1
for
107767524
osa-u.5
for
4344798
osa-u.5
for
4326570
zma-u.5
for
100283675
zma-u.5
for
100286267
tae-r.2
for
123104522
tae-r.2
for
123070192
tae-r.2
for
123078634
hvu-r.1
for
123443201
hvu-r.1
for
123443939
sbi-r.1
for
110437059
sbi-r.1
for
8058208
bdi-r.1
for
100846303
bdi-r.1
for
100830773
cre-r.1
for
CHLRE_06g278097v5


Ortholog ID: 4017
Species ath bra bra bra ghi ghi bna bna bna gma gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol RAE1 LOC103830448 LOC103832465 LOC103853226 LOC107958446 LOC107906437 LOC106354833 LOC106396744 LOC106404761 LOC100527204 LOC100780721 LOC100819240 LOC100250245 LOC100250787 LOC7478293 LOC7490684 LOC25501437 LOC11428530 LOC101247869 LOC102590604 LOC107825929 LOC107767524 LOC4344798 LOC4326570 LOC100283675 LOC100286267 LOC123104522 LOC123061557 LOC123187021 LOC123443201 LOC123443939 LOC110437059 LOC8058208 LOC100846303 LOC100830773 CHLRE_06g278097v5
Function* Transducin/WD40 repeat-like superfamily protein protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1-like protein RAE1 rae1-like protein At1g80670-like putative mRNA export factor protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1-like protein RAE1 protein RAE1 protein RAE1 rae1-like protein rae1-like protein protein RAE1 protein RAE1 protein RAE1 protein RAE1 protein RAE1-like protein RAE1 protein RAE1 protein RAE1 protein RAE1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 7
ath03008 Ribosome biogenesis in eukaryotes 4
ath03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 8
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 8
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03250 Viral life cycle - HIV-1 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 14
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 14
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma00510 N-Glycan biosynthesis 6
gma04141 Protein processing in endoplasmic reticulum 6
gma00513 Various types of N-glycan biosynthesis 5
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03013 Nucleocytoplasmic transport 3
ppo00061 Fatty acid biosynthesis 2
ppo03040 Spliceosome 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 3
ppo03010 Ribosome 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04130 SNARE interactions in vesicular transport 3
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 5
sot03040 Spliceosome 3
sot03008 Ribosome biogenesis in eukaryotes 3
sot03250 Viral life cycle - HIV-1 3
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 6
nta03008 Ribosome biogenesis in eukaryotes 4
nta03250 Viral life cycle - HIV-1 4
nta00190 Oxidative phosphorylation 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 6
nta03008 Ribosome biogenesis in eukaryotes 4
nta03250 Viral life cycle - HIV-1 4
nta00230 Purine metabolism 2
nta00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 4
osa03010 Ribosome 3
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma03022 Basal transcription factors 2
zma03420 Nucleotide excision repair 2
zma04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03008 Ribosome biogenesis in eukaryotes 3
zma03250 Viral life cycle - HIV-1 3
zma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 11
tae03008 Ribosome biogenesis in eukaryotes 5
tae03250 Viral life cycle - HIV-1 5
tae03030 DNA replication 2
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 7
tae04145 Phagosome 4
tae04142 Lysosome 2
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 6
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 2
bdi00620 Pyruvate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
bdi03015 mRNA surveillance pathway 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
cre03013 Nucleocytoplasmic transport 4
cre03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844406 103830448 103832465 103853226 107958446 107906437 106354833 106396744 106404761 100527204 100780721 100819240 100250245 100250787 7478293 7490684 25501437 11428530 101247869 102590604 107825929 107767524 4344798 4326570 100283675 100286267 123104522 123061557 123187021 123443201 123443939 110437059 8058208 100846303 100830773 5723672
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