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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102623293   uncharacterized LOC102623293 
 ath-u.5   AT5G11240   transducin family protein / WD-40 repeat family protein 
 bra-r.6   103846739   WD repeat-containing protein 43 
 bra-r.6   103850762   WD repeat-containing protein 43 
 ghi-r.1   107888936   WD repeat-containing protein 43 
 ghi-r.1   107891849   WD repeat-containing protein 43 
 bna-r.1   106383509   WD repeat-containing protein 43 
 bna-r.1   106372422   WD repeat-containing protein 43-like 
 bna-r.1   106415791   WD repeat-containing protein 43 
 gma-u.5   100815458   WD repeat-containing protein 43 
 gma-u.5   100784148   WD repeat-containing protein 43 
 vvi-u.5   100251740   uncharacterized LOC100251740 
 ppo-u.5   7496504   uncharacterized LOC7496504 
 mtr-u.5   11420256   uncharacterized LOC11420256 
 sly-u.5   101243653   uncharacterized LOC101243653 
 sot-r.1   102578394   WD repeat-containing protein 43 
 nta-r.1   107817394   uncharacterized LOC107817394 
 nta-r.1   107796022   uncharacterized LOC107796022 
 osa-u.5   4332567   uncharacterized LOC4332567 
 zma-u.5   103634524   transducin family protein / WD-40 repeat family protein 
 tae-r.2   123092396   uncharacterized LOC123092396 
 tae-r.2   123085629   uncharacterized LOC123085629 
 tae-r.2   123097717   uncharacterized LOC123097717 
 hvu-r.1   123448861   uncharacterized LOC123448861 
 sbi-r.1   8081109   uncharacterized LOC8081109 
 bdi-r.1   100843293   WD repeat-containing protein 43 
 cre-r.1   CHLRE_12g538500v5   uncharacterized protein 

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Top 50 coexpressed genes to 102623293 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102623293 (cit-r.1 coexpression data)

CoexMap"102623293"


citLOC102623293 | Entrez gene ID : 102623293    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 1 2 2 3 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03008 [list] [network] Ribosome biogenesis in eukaryotes (557 genes)
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006489013.1 [sequence] [blastp]
XP_006489015.1 [sequence] [blastp]
XP_024958503.1 [sequence] [blastp]
XP_024958504.1 [sequence] [blastp]
XP_024958505.1 [sequence] [blastp]
XP_024958506.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  cysk 1  (predict for XP_006489013.1)
cyto 5,  nucl 4,  chlo 1,  cysk 1  (predict for XP_006489015.1)
cyto 5,  nucl 4,  cysk 1  (predict for XP_024958503.1)
cyto 5,  nucl 4,  cysk 1  (predict for XP_024958504.1)
cyto 5,  nucl 4,  cysk 1  (predict for XP_024958505.1)
nucl 4,  cyto 3,  chlo 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_024958506.1)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for XP_006489013.1)
other 7,  scret 3  (predict for XP_006489015.1)
other 7,  scret 3  (predict for XP_024958503.1)
other 7,  scret 3  (predict for XP_024958504.1)
other 7,  scret 3  (predict for XP_024958505.1)
other 7,  scret 3  (predict for XP_024958506.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102623293
ath-u.5
for
AT5G11240
bra-r.6
for
103846739
bra-r.6
for
103850762
ghi-r.1
for
107888936
ghi-r.1
for
107891849
bna-r.1
for
106383509
bna-r.1
for
106372422
bna-r.1
for
106415791
gma-u.5
for
100815458
gma-u.5
for
100784148
vvi-u.5
for
100251740
ppo-u.5
for
7496504
mtr-u.5
for
11420256
sly-u.5
for
101243653
sot-r.1
for
102578394
nta-r.1
for
107817394
nta-r.1
for
107796022
osa-u.5
for
4332567
zma-u.5
for
103634524
tae-r.2
for
123092396
tae-r.2
for
123085629
tae-r.2
for
123097717
hvu-r.1
for
123448861
sbi-r.1
for
8081109
bdi-r.1
for
100843293
cre-r.1
for
CHLRE_12g538500v5


Ortholog ID: 7711
Species cit ath bra bra ghi ghi bna bna bna gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC102623293 AT5G11240 LOC103846739 LOC103850762 LOC107888936 LOC107891849 LOC106383509 LOC106372422 LOC106415791 LOC100815458 LOC100784148 LOC100251740 LOC7496504 LOC11420256 LOC101243653 LOC102578394 LOC107817394 LOC107796022 LOC4332567 LOC103634524 LOC123085629 LOC123097717 LOC123112472 LOC123448861 LOC8081109 LOC100843293 CHLRE_12g538500v5
Function* uncharacterized LOC102623293 transducin family protein / WD-40 repeat family protein WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43-like WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC100251740 uncharacterized LOC7496504 uncharacterized LOC11420256 uncharacterized LOC101243653 WD repeat-containing protein 43 uncharacterized LOC107817394 uncharacterized LOC107796022 uncharacterized LOC4332567 transducin family protein / WD-40 repeat family protein uncharacterized LOC123085629 uncharacterized LOC123097717 uncharacterized LOC123112472 uncharacterized LOC123448861 uncharacterized LOC8081109 WD repeat-containing protein 43 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma00230 Purine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102623293 830994 103846739 103850762 107888936 107891849 106383509 106372422 106415791 100815458 100784148 100251740 7496504 11420256 101243653 102578394 107817394 107796022 4332567 103634524 123085629 123097717 123112472 123448861 8081109 100843293 5718445
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