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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g538500v5   uncharacterized protein 
 ath-u.5   AT5G11240   transducin family protein / WD-40 repeat family protein 
 gma-u.5   102667004   WD repeat-containing protein 43 
 gma-u.5   100815458   WD repeat-containing protein 43 
 sly-u.5   101243653   uncharacterized LOC101243653 
 osa-u.5   4332567   uncharacterized LOC4332567 
 zma-u.5   103634524   transducin family protein / WD-40 repeat family protein 
 vvi-u.5   100251740   uncharacterized LOC100251740 
 ppo-u.5   7496504   uncharacterized LOC7496504 
 mtr-u.5   11420256   uncharacterized LOC11420256 

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Top 50 coexpressed genes to CHLRE_12g538500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g538500v5 (cre-r.1 coexpression data)

CoexMap"5718445"


creCHLRE_12g538500v5 | Entrez gene ID : 5718445    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042918791.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  pero 3,  cyto_pero 3,  chlo 1,  nucl 1,  cyto_E.R. 1  (predict for XP_042918791.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_042918791.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g538500v5

.
ath-u.5
for
AT5G11240

.
gma-u.5
for
102667004

.
gma-u.5
for
100815458

.
sly-u.5
for
101243653

.
osa-u.5
for
4332567

.
zma-u.5
for
103634524

.
vvi-u.5
for
100251740

.
ppo-u.5
for
7496504

.
mtr-u.5
for
11420256

.


Ortholog ID: 7711
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT5G11240 LOC100784148 LOC100815458 LOC101243653 LOC4332567 LOC103634524 LOC103850762 LOC103846739 LOC100251740 LOC7496504 LOC11420256 LOC123112472 LOC123085629 LOC123448861 LOC107888936 LOC107891849 LOC106372422 LOC106383509 CHLRE_12g538500v5 LOC8081109 LOC102578394 LOC102623293 LOC100843293 LOC107796022 LOC107817394
Function* transducin family protein / WD-40 repeat family protein WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC101243653 uncharacterized LOC4332567 transducin family protein / WD-40 repeat family protein WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC100251740 uncharacterized LOC7496504 uncharacterized LOC11420256 uncharacterized LOC123112472 uncharacterized LOC123085629 uncharacterized LOC123448861 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43-like WD repeat-containing protein 43 uncharacterized protein uncharacterized LOC8081109 WD repeat-containing protein 43 uncharacterized LOC102623293 WD repeat-containing protein 43 uncharacterized LOC107796022 uncharacterized LOC107817394
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma00230 Purine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830994 100784148 100815458 101243653 4332567 103634524 103850762 103846739 100251740 7496504 11420256 123112472 123085629 123448861 107888936 107891849 106372422 106383509 5718445 8081109 102578394 102623293 100843293 107796022 107817394
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