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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102609776   polygalacturonase 
 cit-r.1   PG   polygalacturonase 
 ath-u.5   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-u.5   QRT2   Pectin lyase-like superfamily protein 
 bra-r.6   103830105   polygalacturonase ADPG1 
 bra-r.6   103830423   probable polygalacturonase At1g80170 
 ghi-r.1   121204886   polygalacturonase 
 ghi-r.1   121208197   probable polygalacturonase At1g80170 
 ghi-r.1   107914715   probable polygalacturonase At1g80170 
 vvi-u.5   100263423   probable polygalacturonase At1g80170 
 vvi-u.5   100855221   polygalacturonase 
 vvi-u.5   100257239   polygalacturonase 
 ppo-u.5   7468975   polygalacturonase 
 ppo-u.5   7478117   probable polygalacturonase At1g80170 
 mtr-u.5   11433078   probable polygalacturonase At1g80170 
 sly-u.5   XOPG1   polygalacturonase 
 sly-u.5   PG2   polygalacturonase-2a 
 sot-r.1   102594305   probable polygalacturonase At1g80170 
 nta-r.1   107825814   polygalacturonase-like 
 nta-r.1   107825799   polygalacturonase 
 osa-u.5   4339483   probable polygalacturonase At1g80170 
 zma-u.5   103644217   polygalacturonase 
 zma-u.5   103644218   polygalacturonase ADPG1 
 hvu-r.1   123448060   probable polygalacturonase At1g80170 
 sbi-r.1   8061087   probable polygalacturonase At1g80170 
 bdi-r.1   100823204   polygalacturonase ADPG1 

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Top 50 coexpressed genes to 102609776 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102609776 (cit-r.1 coexpression data)

CoexMap"102628485"


citLOC102628485 | Entrez gene ID : 102628485    
Species cit ath bra ghi vvi ppo mtr sly sot nta osa zma hvu sbi bdi gma cre tae bna
Paralog 2 2 2 3 3 2 1 2 1 2 1 2 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit00040 [list] [network] Pentose and glucuronate interconversions (105 genes)
GO BP
GO:0009901 [list] [network] anther dehiscence  (2 genes)  IEA  
GO:0010047 [list] [network] fruit dehiscence  (2 genes)  IEA  
GO:0045490 [list] [network] pectin catabolic process  (2 genes)  IEA  
GO CC
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (60 genes)  IEA  
Protein XP_006489947.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  extr 3,  chlo_mito 3  (predict for XP_006489947.2)
Subcellular
localization
TargetP
scret 9  (predict for XP_006489947.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102609776
cit-r.1
for
PG
ath-u.5
for
PGAZAT
ath-u.5
for
QRT2
bra-r.6
for
103830105
bra-r.6
for
103830423
ghi-r.1
for
121204886
ghi-r.1
for
121208197
ghi-r.1
for
107914715
vvi-u.5
for
100263423
vvi-u.5
for
100855221
vvi-u.5
for
100257239
ppo-u.5
for
7468975
ppo-u.5
for
7478117
mtr-u.5
for
11433078
sly-u.5
for
XOPG1
sly-u.5
for
PG2
sot-r.1
for
102594305
nta-r.1
for
107825814
nta-r.1
for
107825799
osa-u.5
for
4339483
zma-u.5
for
103644217
zma-u.5
for
103644218
hvu-r.1
for
123448060
sbi-r.1
for
8061087
bdi-r.1
for
100823204


Ortholog ID: 458
Species cit cit ath ath bra ghi vvi vvi ppo mtr sly sly sot sot nta nta nta osa zma zma bdi
Symbol LOC102609776 PG QRT2 AT1G80170 LOC103830105 LOC107950651 LOC100265326 LOC100243033 LOC7478117 LOC11433078 PG2 LOC101264436 LOC102594305 LOC102585179 LOC107824130 LOC107805711 LOC107779855 LOC4339483 LOC103644217 LOC103644218 LOC100829282
Function* polygalacturonase polygalacturonase Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein polygalacturonase ADPG1 polygalacturonase QRT2 polygalacturonase polygalacturonase probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase-2a probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase-2-like polygalacturonase-like probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase polygalacturonase ADPG1 uncharacterized LOC100829282
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 4
ath04981 Folate transport and metabolism 4
ath00561 Glycerolipid metabolism 2
ath00564 Glycerophospholipid metabolism 2
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 4
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00040 Pentose and glucuronate interconversions 3
vvi00062 Fatty acid elongation 3
vvi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 3
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 3
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 3
nta04142 Lysosome 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102609776 102578026 819988 844357 103830105 107950651 100265326 100243033 7478117 11433078 544051 101264436 102594305 102585179 107824130 107805711 107779855 4339483 103644217 103644218 100829282
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