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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-r.7   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-m.9   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-e.2   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-m.4.bio   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-m.4.hor   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-m.4.lig   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-m.4.str   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-m.4.tis   PGAZAT   polygalacturonase ADPG2-like protein 
 ath-u.5   AT1G80170   Pectin lyase-like superfamily protein 
 ath-u.5   QRT2   Pectin lyase-like superfamily protein 
 bra-r.6   103870621   polygalacturonase QRT2-like 
 bra-r.6   103830105   polygalacturonase ADPG1 
 ghi-r.1   107918834   polygalacturonase QRT2 
 cit-r.1   PG   polygalacturonase 
 gma-u.5   100819195   probable polygalacturonase At1g80170 
 vvi-u.5   100255477   polygalacturonase 
 vvi-u.5   100257239   polygalacturonase 
 ppo-u.5   7478117   probable polygalacturonase At1g80170 
 mtr-u.5   11433078   probable polygalacturonase At1g80170 
 sly-u.5   101264436   probable polygalacturonase At1g80170 
 sly-u.5   PG2   polygalacturonase-2a 
 sot-r.1   102594305   probable polygalacturonase At1g80170 
 nta-r.1   107779855   probable polygalacturonase At1g80170 
 osa-u.5   4342698   polygalacturonase 
 zma-u.5   103644218   polygalacturonase ADPG1 
 zma-u.5   103644217   polygalacturonase 
 tae-r.2   123143035   probable polygalacturonase At1g80170 
 hvu-r.1   123448060   probable polygalacturonase At1g80170 
 sbi-r.1   8061087   probable polygalacturonase At1g80170 
 bdi-r.1   100829282   uncharacterized LOC100829282 

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Top 50 coexpressed genes to PGAZAT (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PGAZAT (ath-u.5 coexpression data)

CoexMap"818785"


athPGAZAT | Entrez gene ID : 818785      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi bna cre
Paralog 11 2 1 1 1 2 1 1 2 1 1 1 2 1 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
GO BP
GO:0009830 [list] [network] cell wall modification involved in abscission  (3 genes)  TAS  
GO:0010047 [list] [network] fruit dehiscence  (13 genes)  IMP  
GO:0009901 [list] [network] anther dehiscence  (21 genes)  IMP  
GO:0010227 [list] [network] floral organ abscission  (26 genes)  IMP  
GO CC
GO:0005576 [list] [network] extracellular region  (3158 genes)  ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (69 genes)  IDA  
Protein NP_850359.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  extr 4,  mito 1,  vacu 1,  golg 1  (predict for NP_850359.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_850359.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PGAZAT
ath-r.7
for
PGAZAT
ath-m.9
for
PGAZAT
ath-e.2
for
PGAZAT
ath-m.4.bio
for
PGAZAT
ath-m.4.hor
for
PGAZAT
ath-m.4.lig
for
PGAZAT
ath-m.4.str
for
PGAZAT
ath-m.4.tis
for
PGAZAT
ath-u.5
for
AT1G80170
ath-u.5
for
QRT2
bra-r.6
for
103870621
bra-r.6
for
103830105
ghi-r.1
for
107918834
cit-r.1
for
PG
gma-u.5
for
100819195
vvi-u.5
for
100255477
vvi-u.5
for
100257239
ppo-u.5
for
7478117
mtr-u.5
for
11433078
sly-u.5
for
101264436
sly-u.5
for
PG2
sot-r.1
for
102594305
nta-r.1
for
107779855
osa-u.5
for
4342698
zma-u.5
for
103644218
zma-u.5
for
103644217
tae-r.2
for
123143035
hvu-r.1
for
123448060
sbi-r.1
for
8061087
bdi-r.1
for
100829282


Ortholog ID: 458
Species ath ath bra ghi cit cit vvi vvi ppo mtr sly sly sot sot nta nta nta osa zma zma bdi
Symbol AT1G80170 QRT2 LOC103830105 LOC107950651 PG LOC102609776 LOC100243033 LOC100265326 LOC7478117 LOC11433078 LOC101264436 PG2 LOC102594305 LOC102585179 LOC107779855 LOC107805711 LOC107824130 LOC4339483 LOC103644218 LOC103644217 LOC100829282
Function* Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein polygalacturonase ADPG1 polygalacturonase QRT2 polygalacturonase polygalacturonase polygalacturonase polygalacturonase probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase-2a probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 probable polygalacturonase At1g80170 polygalacturonase-like polygalacturonase-2-like probable polygalacturonase At1g80170 polygalacturonase ADPG1 polygalacturonase uncharacterized LOC100829282
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 4
ath04981 Folate transport and metabolism 4
ath00561 Glycerolipid metabolism 2
ath00564 Glycerophospholipid metabolism 2
ath00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 4
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00040 Pentose and glucuronate interconversions 3
vvi00062 Fatty acid elongation 3
vvi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00360 Phenylalanine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 3
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 3
nta04142 Lysosome 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 3
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844357 819988 103830105 107950651 102578026 102609776 100243033 100265326 7478117 11433078 101264436 544051 102594305 102585179 107779855 107805711 107824130 4339483 103644218 103644217 100829282
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