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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102629361   WD repeat-containing protein PCN 
 ath-u.5   PCN   Transducin family protein / WD-40 repeat family protein 
 ath-u.5   AT1G27470   transducin family protein / WD-40 repeat family protein 
 bra-r.6   103839035   WD repeat-containing protein PCN 
 bra-r.6   103835391   WD repeat-containing protein PCN 
 bra-r.6   103858462   WD repeat-containing protein PCN 
 ghi-r.1   107896835   WD repeat-containing protein PCN 
 ghi-r.1   107910603   WD repeat-containing protein PCN 
 ghi-r.1   107914519   WD repeat-containing protein PCN 
 bna-r.1   106396903   WD repeat-containing protein PCN-like 
 bna-r.1   106389594   WD repeat-containing protein PCN-like 
 bna-r.1   106388458   WD repeat-containing protein PCN 
 gma-u.5   100776641   WD repeat-containing protein PCN 
 gma-u.5   100797494   WD repeat-containing protein PCN 
 vvi-u.5   100243694   WD repeat-containing protein PCN 
 ppo-u.5   7472654   WD repeat-containing protein PCN 
 ppo-u.5   7497321   WD repeat-containing protein PCN 
 mtr-u.5   11421232   WD repeat-containing protein PCN 
 mtr-u.5   11417189   WD repeat-containing protein PCN 
 sly-u.5   101256087   WD repeat-containing protein PCN 
 sly-u.5   101254771   WD repeat-containing protein PCN 
 sot-r.1   102592528   cirhin-like 
 sot-r.1   102585972   U3 small nucleolar RNA-associated protein 4 
 nta-r.1   107801952   WD repeat-containing protein PCN 
 nta-r.1   107793854   WD repeat-containing protein PCN 
 nta-r.1   107790763   WD repeat-containing protein PCN-like 
 osa-u.5   4334021   WD repeat-containing protein PCN 
 zma-u.5   103625908   WD repeat-containing protein PCN 
 zma-u.5   103643972   WD repeat-containing protein PCN 
 tae-r.2   123096027   WD repeat-containing protein PCN 
 tae-r.2   123091017   WD repeat-containing protein PCN 
 tae-r.2   123086958   WD repeat-containing protein PCN 
 hvu-r.1   123447693   WD repeat-containing protein PCN-like 
 sbi-r.1   8059937   U3 small nucleolar RNA-associated protein 4 
 bdi-r.1   100837329   WD repeat-containing protein PCN 
 cre-r.1   CHLRE_13g606850v5   uncharacterized protein 

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Top 50 coexpressed genes to 102629361 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102629361 (cit-r.1 coexpression data)

CoexMap"102629361"


citLOC102629361 | Entrez gene ID : 102629361    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 3 3 3 2 1 2 2 2 2 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cit03008 [list] [network] Ribosome biogenesis in eukaryotes (557 genes)
GO BP
GO:0035266 [list] [network] meristem growth  (1 genes)  IEA  
GO:0010073 [list] [network] meristem maintenance  (14 genes)  IEA  
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3939 genes)  IEA  
Protein XP_006472314.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 3  (predict for XP_006472314.2)
Subcellular
localization
TargetP
other 4  (predict for XP_006472314.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102629361
ath-u.5
for
PCN
ath-u.5
for
AT1G27470
bra-r.6
for
103839035
bra-r.6
for
103835391
bra-r.6
for
103858462
ghi-r.1
for
107896835
ghi-r.1
for
107910603
ghi-r.1
for
107914519
bna-r.1
for
106396903
bna-r.1
for
106389594
bna-r.1
for
106388458
gma-u.5
for
100776641
gma-u.5
for
100797494
vvi-u.5
for
100243694
ppo-u.5
for
7472654
ppo-u.5
for
7497321
mtr-u.5
for
11421232
mtr-u.5
for
11417189
sly-u.5
for
101256087
sly-u.5
for
101254771
sot-r.1
for
102592528
sot-r.1
for
102585972
nta-r.1
for
107801952
nta-r.1
for
107793854
nta-r.1
for
107790763
osa-u.5
for
4334021
zma-u.5
for
103625908
zma-u.5
for
103643972
tae-r.2
for
123096027
tae-r.2
for
123091017
tae-r.2
for
123086958
hvu-r.1
for
123447693
sbi-r.1
for
8059937
bdi-r.1
for
100837329
cre-r.1
for
CHLRE_13g606850v5


Ortholog ID: 4758
Species cit ath ath bra bra bra ghi ghi ghi bna bna bna gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC102629361 PCN AT1G27470 LOC103839035 LOC103835391 LOC103858462 LOC107896835 LOC107914519 LOC107951051 LOC106389594 LOC106367316 LOC106367904 LOC100776641 LOC100797494 LOC100243694 LOC7472654 LOC7497321 LOC11421232 LOC11417189 LOC101256087 LOC101254771 LOC102592528 LOC102585972 LOC107801952 LOC107790763 LOC107768711 LOC4334021 LOC103625908 LOC103643972 LOC123096027 LOC123091017 LOC123086958 LOC123447693 LOC8059937 LOC100837329 CHLRE_13g606850v5
Function* WD repeat-containing protein PCN Transducin family protein / WD-40 repeat family protein transducin family protein / WD-40 repeat family protein WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN-like WD repeat-containing protein PCN-like WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN cirhin-like U3 small nucleolar RNA-associated protein 4 WD repeat-containing protein PCN WD repeat-containing protein PCN-like WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN-like U3 small nucleolar RNA-associated protein 4 WD repeat-containing protein PCN uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 7
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 7
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi00860 Porphyrin metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi00970 Aminoacyl-tRNA biosynthesis 5
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03060 Protein export 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03060 Protein export 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102629361 826172 839638 103839035 103835391 103858462 107896835 107914519 107951051 106389594 106367316 106367904 100776641 100797494 100243694 7472654 7497321 11421232 11417189 101256087 101254771 102592528 102585972 107801952 107790763 107768711 4334021 103625908 103643972 123096027 123091017 123086958 123447693 8059937 100837329 66056124
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