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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_13g606850v5   uncharacterized protein 
 ath-u.5   PCN   Transducin family protein / WD-40 repeat family protein 
 ath-u.5   AT1G27470   transducin family protein / WD-40 repeat family protein 
 gma-u.5   100797494   WD repeat-containing protein PCN 
 gma-u.5   100776641   WD repeat-containing protein PCN 
 sly-u.5   101256087   WD repeat-containing protein PCN 
 sly-u.5   101254771   WD repeat-containing protein PCN 
 osa-u.5   4334021   WD repeat-containing protein PCN 
 zma-u.5   103625908   WD repeat-containing protein PCN 
 zma-u.5   103643972   WD repeat-containing protein PCN 
 vvi-u.5   100243694   WD repeat-containing protein PCN 
 ppo-u.5   7472654   WD repeat-containing protein PCN 
 ppo-u.5   7497321   WD repeat-containing protein PCN 
 mtr-u.5   11421232   WD repeat-containing protein PCN 
 mtr-u.5   11417189   WD repeat-containing protein PCN 

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Top 50 coexpressed genes to CHLRE_13g606850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_13g606850v5 (cre-r.1 coexpression data)

CoexMap"66056124"


creCHLRE_13g606850v5 | Entrez gene ID : 66056124    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0034455 [list] [network] t-UTP complex  (2 genes)  IEA  
GO:0030686 [list] [network] 90S preribosome  (30 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042917868.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 2,  nucl 1,  cyto 1,  pero 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1  (predict for XP_042917868.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_042917868.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_13g606850v5

.
ath-u.5
for
PCN

.
ath-u.5
for
AT1G27470

.
gma-u.5
for
100797494

.
gma-u.5
for
100776641

.
sly-u.5
for
101256087

.
sly-u.5
for
101254771

.
osa-u.5
for
4334021

.
zma-u.5
for
103625908

.
zma-u.5
for
103643972

.
vvi-u.5
for
100243694

.
ppo-u.5
for
7472654

.
ppo-u.5
for
7497321

.
mtr-u.5
for
11421232

.
mtr-u.5
for
11417189

.


Ortholog ID: 4758
Species ath ath gma gma sly sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol PCN AT1G27470 LOC100797494 LOC100776641 LOC101254771 LOC101256087 LOC4334021 LOC103643972 LOC103625908 LOC103858462 LOC103839035 LOC100243694 LOC7472654 LOC7497321 LOC11421232 LOC11417189 LOC123091017 LOC123086958 LOC123447693 LOC107896835 LOC107914519 LOC106367316 LOC106389594 CHLRE_13g606850v5 LOC8059937 LOC102592528 LOC102585972 LOC102629361 LOC100837329 LOC107801952 LOC107768711
Function* Transducin family protein / WD-40 repeat family protein transducin family protein / WD-40 repeat family protein WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN-like WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN-like WD repeat-containing protein PCN-like uncharacterized protein U3 small nucleolar RNA-associated protein 4 cirhin-like U3 small nucleolar RNA-associated protein 4 WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN WD repeat-containing protein PCN
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 7
ghi00450 Selenocompound metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 7
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi00860 Porphyrin metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03060 Protein export 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03060 Protein export 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826172 839638 100797494 100776641 101254771 101256087 4334021 103643972 103625908 103858462 103839035 100243694 7472654 7497321 11421232 11417189 123091017 123086958 123447693 107896835 107914519 106367316 106389594 66056124 8059937 102592528 102585972 102629361 100837329 107801952 107768711
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