ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102629590	PH, RCC1 and FYVE domains-containing protein 1
cit-r.1	102630015	PH, RCC1 and FYVE domains-containing protein 1-like
cit-r.1	102623949	PH, RCC1 and FYVE domains-containing protein 1
cit-r.1	102623335	PH, RCC1 and FYVE domains-containing protein 1
ath-u.5	AT5G12350	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
ath-u.5	AT5G19420	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
ath-u.5	AT1G65920	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
bra-r.6	103856379	PH, RCC1 and FYVE domains-containing protein 1
bra-r.6	103845756	PH, RCC1 and FYVE domains-containing protein 1
ghi-r.1	107891452	PH, RCC1 and FYVE domains-containing protein 1
ghi-r.1	107895189	PH, RCC1 and FYVE domains-containing protein 1
ghi-r.1	107912868	PH, RCC1 and FYVE domains-containing protein 1
bna-r.1	106434266	PH, RCC1 and FYVE domains-containing protein 1-like
bna-r.1	106403596	PH, RCC1 and FYVE domains-containing protein 1-like
gma-u.5	100797527	PH, RCC1 and FYVE domains-containing protein 1
gma-u.5	100806439	PH, RCC1 and FYVE domains-containing protein 1
gma-u.5	100791947	PH, RCC1 and FYVE domains-containing protein 1
vvi-u.5	100243300	PH, RCC1 and FYVE domains-containing protein 1
vvi-u.5	100253065	PH, RCC1 and FYVE domains-containing protein 1
vvi-u.5	100244665	PH, RCC1 and FYVE domains-containing protein 1
ppo-u.5	7496775	PH, RCC1 and FYVE domains-containing protein 1
ppo-u.5	18106548	PH, RCC1 and FYVE domains-containing protein 1
mtr-u.5	11425815	PH, RCC1 and FYVE domains-containing protein 1
mtr-u.5	11406734	PH, RCC1 and FYVE domains-containing protein 1
sly-u.5	101262813	PH, RCC1 and FYVE domains-containing protein 1-like
sly-u.5	101265608	PH, RCC1 and FYVE domains-containing protein 1
sly-u.5	101267670	PH, RCC1 and FYVE domains-containing protein 1
sot-r.1	102600493	uncharacterized LOC102600493
sot-r.1	102590844	uncharacterized LOC102590844
sot-r.1	102588539	uncharacterized LOC102588539
nta-r.1	107807728	PH, RCC1 and FYVE domains-containing protein 1-like
nta-r.1	107806494	PH, RCC1 and FYVE domains-containing protein 1-like
nta-r.1	107799299	PH, RCC1 and FYVE domains-containing protein 1-like
osa-u.5	4336778	PH, RCC1 and FYVE domains-containing protein 1
osa-u.5	4325746	PH, RCC1 and FYVE domains-containing protein 1
zma-u.5	100280426	uncharacterized LOC100280426
zma-u.5	103653921	Putative regulator of chromosome condensation (RCC1) family protein
zma-u.5	103636281	Putative regulator of chromosome condensation (RCC1) family protein
tae-r.2	123046702	PH, RCC1 and FYVE domains-containing protein 1
hvu-r.1	123407055	PH, RCC1 and FYVE domains-containing protein 1-like
hvu-r.1	123445529	PH, RCC1 and FYVE domains-containing protein 1-like
hvu-r.1	123427836	PH, RCC1 and FYVE domains-containing protein 1
sbi-r.1	8057696	uncharacterized LOC8057696
sbi-r.1	8077365	uncharacterized LOC8077365
bdi-r.1	100842512	PH, RCC1 and FYVE domains-containing protein 1
bdi-r.1	100838586	PH, RCC1 and FYVE domains-containing protein 1
bdi-r.1	100836916	PH, RCC1 and FYVE domains-containing protein 1
cre-r.1	CHLRE_16g691050v5	uncharacterized protein

Top 50 coexpressed genes to 102629590 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102629590 (cit-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

PH, RCC1 and FYVE domains-containing protein 1

KEGG

GO BP

GO CC

GO MF

GO:0046872 [list] [network] metal ion binding

(1833 genes)

IEA

Protein

XP_024955313.1 [sequence] [blastp]
XP_024955314.1 [sequence] [blastp]
XP_052299848.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_024955313.1)
nucl 9, plas 1, cysk 1, cysk_plas 1	(predict for XP_024955314.1)
nucl 10	(predict for XP_052299848.1)

Subcellular
localization
TargetP

other 9	(predict for XP_024955313.1)
other 9	(predict for XP_024955314.1)
other 9	(predict for XP_052299848.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102629590	cit-r.1 for 102630015	cit-r.1 for 102623949	cit-r.1 for 102623335	ath-u.5 for AT5G12350	ath-u.5 for AT5G19420	ath-u.5 for AT1G65920	bra-r.6 for 103856379	bra-r.6 for 103845756	ghi-r.1 for 107891452	ghi-r.1 for 107895189	ghi-r.1 for 107912868	bna-r.1 for 106434266	bna-r.1 for 106403596	gma-u.5 for 100797527	gma-u.5 for 100806439	gma-u.5 for 100791947	vvi-u.5 for 100243300	vvi-u.5 for 100253065	vvi-u.5 for 100244665	ppo-u.5 for 7496775	ppo-u.5 for 18106548	mtr-u.5 for 11425815	mtr-u.5 for 11406734	sly-u.5 for 101262813	sly-u.5 for 101265608	sly-u.5 for 101267670	sot-r.1 for 102600493	sot-r.1 for 102590844	sot-r.1 for 102588539	nta-r.1 for 107807728	nta-r.1 for 107806494	nta-r.1 for 107799299	osa-u.5 for 4336778	osa-u.5 for 4325746	zma-u.5 for 100280426	zma-u.5 for 103653921	zma-u.5 for 103636281	tae-r.2 for 123046702	hvu-r.1 for 123407055	hvu-r.1 for 123445529	hvu-r.1 for 123427836	sbi-r.1 for 8057696	sbi-r.1 for 8077365	bdi-r.1 for 100842512	bdi-r.1 for 100838586	bdi-r.1 for 100836916	cre-r.1 for CHLRE_16g691050v5

Please wait a moment.

Ortholog

Ortholog ID: 695

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

G93

Function^*

PH, RCC1 and FYVE domains-containing protein 1-like

PH, RCC1 and FYVE domains-containing protein 1

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein

PH, RCC1 and FYVE domains-containing protein 1

PH, RCC1 and FYVE domains-containing protein 1-like

PH, RCC1 and FYVE domains-containing protein 1

PH/RCC1/FYVE zinc finger domain-containing protein G93

PH, RCC1 and FYVE domains-containing protein 1

uncharacterized LOC102600493

uncharacterized LOC102588539

uncharacterized LOC102578724

PH, RCC1 and FYVE domains-containing protein 1-like

PH, RCC1 and FYVE domains-containing protein 1

Putative regulator of chromosome condensation (RCC1) family protein

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

PH, RCC1 and FYVE domains-containing protein 1

PH, RCC1 and FYVE domains-containing protein 1-like

uncharacterized LOC8057696

uncharacterized LOC8077365

PH, RCC1 and FYVE domains-containing protein 1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4
cit04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	4
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3
gma04075	Plant hormone signal transduction	2
gma00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00630	Glyoxylate and dicarboxylate metabolism	3
osa01200	Carbon metabolism	3
osa00260	Glycine, serine and threonine metabolism	2
osa00710	Carbon fixation by Calvin cycle	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	3
sbi04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	6

Expression

Expression pattern

Entrez Gene ID^*

102630015

102623335

102612328

831110

832062

103845756

103850825

121207585

107938375

107920477

106403596

106380801

106372363

100806439

100794953

100797223

100243300

100253065

100250008

7496775

7476847

11425815

112419908

101265608

101256573

101257851

102600493

102588539

102578724

107806494

107799299

107774471

4336778

4325746

103653921

103636281

103646027

123054117

123080719

123407055

123445529

123401550

8057696

8077365

100842512

100836916

100834588

66056808

The preparation time of this page was 0.3 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	2	3	2	3	3	2	2	3	3	3	2	3	1	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102629590 (cit-r.1 coexpression data)

Top 50 enrichment test to 102629590 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**