ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100803947	DNA-directed RNA polymerase III subunit RPC3
gma-u.5	100784750	DNA-directed RNA polymerase III subunit rpc3
gma-u.5	102663439	DNA-directed RNA polymerase III subunit rpc3
mtr-u.5	11419754	DNA-directed RNA polymerase III subunit RPC3
ppo-u.5	7474050	uncharacterized LOC7474050
ath-u.5	AT3G49000	RNA polymerase III subunit RPC82 family protein
vvi-u.5	100267008	uncharacterized LOC100267008
vvi-u.5	104879248	uncharacterized LOC104879248
sly-u.5	101264729	uncharacterized LOC101264729
osa-u.5	4325277	uncharacterized LOC4325277
zma-u.5	118474729	DNA-directed RNA polymerase III subunit RPC3-like
zma-u.5	103651514	uncharacterized LOC103651514

functional annotation

KEGG

GO BP

GO CC

GO:0005666 [list] [network] RNA polymerase III complex

(45 genes)

IEA

GO MF

GO:0003697 [list] [network] single-stranded DNA binding

(161 genes)

IEA

Protein

XP_006606109.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 2, cyto_E.R. 2, nucl 1, extr 1, chlo_mito 1

(predict for XP_006606109.1)

Subcellular
localization
TargetP

other 7, scret 5

(predict for XP_006606109.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100803947	gma-u.5 for 100784750	gma-u.5 for 102663439	mtr-u.5 for 11419754	ppo-u.5 for 7474050	ath-u.5 for AT3G49000	vvi-u.5 for 100267008	vvi-u.5 for 104879248	sly-u.5 for 101264729	osa-u.5 for 4325277	zma-u.5 for 118474729	zma-u.5 for 103651514

Ortholog ID: 7243

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

DNA-directed RNA polymerase III subunit rpc3

DNA-directed RNA polymerase III subunit RPC3

uncharacterized LOC7474050

RNA polymerase III subunit RPC82 family protein

uncharacterized LOC103828227

uncharacterized LOC103873509

uncharacterized LOC100267008

uncharacterized LOC104879248

DNA-directed RNA polymerase III subunit RPC3

uncharacterized LOC106365520

uncharacterized LOC106387833

uncharacterized LOC102613614

uncharacterized LOC101264729

DNA-directed RNA polymerase III subunit RPC3

uncharacterized LOC107813670

uncharacterized LOC107774832

uncharacterized LOC4325277

uncharacterized LOC103651514

DNA-directed RNA polymerase III subunit RPC3-like

DNA-directed RNA polymerase III subunit RPC3

DNA-directed RNA polymerase III subunit rpc3

DNA-directed RNA polymerase III subunit RPC3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	6
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	4
sly03018	RNA degradation	3
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03440	Homologous recombination	3
tae03450	Non-homologous end-joining	3
tae03013	Nucleocytoplasmic transport	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae03440	Homologous recombination	3
tae03450	Non-homologous end-joining	3
tae00310	Lysine degradation	3
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03020	RNA polymerase	2
sbi00970	Aminoacyl-tRNA biosynthesis	2
sbi00340	Histidine metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03450	Non-homologous end-joining	2
bdi03020	RNA polymerase	2
bdi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

102663439

100803947

11419754

7474050

824061

103828227

103873509

100267008

104879248

107888743

107892078

106365520

106387833

102613614

101264729

102597386

107813670

107774832

4325277

103651514

118474729

123078982

123070579

123444106

8068018

100837993

5721432

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100803947 (gma-u.5 coexpression data)

Top 50 enrichment test to 100803947 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	3	1	1	1	2	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100803947 (gma-u.5 coexpression data)

Top 50 enrichment test to 100803947 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**