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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106387833   uncharacterized LOC106387833 
 bna-r.1   106365520   uncharacterized LOC106365520 
 bra-r.6   103873509   uncharacterized LOC103873509 
 bra-r.6   103828227   uncharacterized LOC103828227 
 ath-u.5   AT3G49000   RNA polymerase III subunit RPC82 family protein 
 ghi-r.1   107892078   DNA-directed RNA polymerase III subunit RPC3 
 ghi-r.1   107888743   DNA-directed RNA polymerase III subunit RPC3 
 cit-r.1   102613614   uncharacterized LOC102613614 
 gma-u.5   102663439   DNA-directed RNA polymerase III subunit rpc3 
 gma-u.5   100784750   DNA-directed RNA polymerase III subunit rpc3 
 vvi-u.5   104879248   uncharacterized LOC104879248 
 vvi-u.5   100267008   uncharacterized LOC100267008 
 ppo-u.5   7474050   uncharacterized LOC7474050 
 mtr-u.5   11419754   DNA-directed RNA polymerase III subunit RPC3 
 sly-u.5   101264729   uncharacterized LOC101264729 
 sot-r.1   102597386   DNA-directed RNA polymerase III subunit RPC3 
 nta-r.1   107813670   uncharacterized LOC107813670 
 nta-r.1   107774832   uncharacterized LOC107774832 
 osa-u.5   4325277   uncharacterized LOC4325277 
 zma-u.5   118474729   DNA-directed RNA polymerase III subunit RPC3-like 
 zma-u.5   103651514   uncharacterized LOC103651514 
 tae-r.2   123061884   DNA-directed RNA polymerase III subunit RPC3 
 tae-r.2   123078982   DNA-directed RNA polymerase III subunit RPC3 
 tae-r.2   123110375   DNA-directed RNA polymerase III subunit RPC3 
 hvu-r.1   123444106   DNA-directed RNA polymerase III subunit rpc3 
 sbi-r.1   8068018   DNA-directed RNA polymerase III subunit rpc3 
 bdi-r.1   100837993   DNA-directed RNA polymerase III subunit RPC3 
 cre-r.1   CHLRE_16g673900v5   uncharacterized protein 

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Top 50 coexpressed genes to 106387833 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106387833 (bna-r.1 coexpression data)

CoexMap"106387833"


bnaLOC106387833 | Entrez gene ID : 106387833    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 1 2 1 2 2 1 1 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (74 genes)  IEA  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (274 genes)  IEA  
Protein XP_013683210.1 [sequence] [blastp]
XP_022555540.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  plas 1,  chlo_mito 1  (predict for XP_013683210.1)
nucl 5,  chlo 2,  cyto 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_022555540.1)
Subcellular
localization
TargetP
scret 5  (predict for XP_013683210.1)
scret 5  (predict for XP_022555540.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106387833
bna-r.1
for
106365520
bra-r.6
for
103873509
bra-r.6
for
103828227
ath-u.5
for
AT3G49000
ghi-r.1
for
107892078
ghi-r.1
for
107888743
cit-r.1
for
102613614
gma-u.5
for
102663439
gma-u.5
for
100784750
vvi-u.5
for
104879248
vvi-u.5
for
100267008
ppo-u.5
for
7474050
mtr-u.5
for
11419754
sly-u.5
for
101264729
sot-r.1
for
102597386
nta-r.1
for
107813670
nta-r.1
for
107774832
osa-u.5
for
4325277
zma-u.5
for
118474729
zma-u.5
for
103651514
tae-r.2
for
123061884
tae-r.2
for
123078982
tae-r.2
for
123110375
hvu-r.1
for
123444106
sbi-r.1
for
8068018
bdi-r.1
for
100837993
cre-r.1
for
CHLRE_16g673900v5


Ortholog ID: 7243
Species bna bna bra bra ath ghi ghi cit gma gma vvi vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC106387833 LOC106365520 LOC103873509 LOC103828227 AT3G49000 LOC107892078 LOC107888743 LOC102613614 LOC102663439 LOC100803947 LOC104879248 LOC100267008 LOC7474050 LOC11419754 LOC101264729 LOC102597386 LOC107813670 LOC107774832 LOC4325277 LOC118474729 LOC103651514 LOC123061884 LOC123078982 LOC123070579 LOC123444106 LOC8068018 LOC100837993 CHLRE_16g673900v5
Function* uncharacterized LOC106387833 uncharacterized LOC106365520 uncharacterized LOC103873509 uncharacterized LOC103828227 RNA polymerase III subunit RPC82 family protein DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC102613614 DNA-directed RNA polymerase III subunit rpc3 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC104879248 uncharacterized LOC100267008 uncharacterized LOC7474050 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC101264729 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC107813670 uncharacterized LOC107774832 uncharacterized LOC4325277 DNA-directed RNA polymerase III subunit RPC3-like uncharacterized LOC103651514 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit rpc3 DNA-directed RNA polymerase III subunit rpc3 DNA-directed RNA polymerase III subunit RPC3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae03013 Nucleocytoplasmic transport 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae00310 Lysine degradation 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03020 RNA polymerase 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106387833 106365520 103873509 103828227 824061 107892078 107888743 102613614 102663439 100803947 104879248 100267008 7474050 11419754 101264729 102597386 107813670 107774832 4325277 118474729 103651514 123061884 123078982 123070579 123444106 8068018 100837993 5721432
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