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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g673900v5   uncharacterized protein 
 ath-u.5   AT3G49000   RNA polymerase III subunit RPC82 family protein 
 gma-u.5   100803947   DNA-directed RNA polymerase III subunit RPC3 
 gma-u.5   100784750   DNA-directed RNA polymerase III subunit rpc3 
 sly-u.5   101264729   uncharacterized LOC101264729 
 osa-u.5   4325277   uncharacterized LOC4325277 
 zma-u.5   118474729   DNA-directed RNA polymerase III subunit RPC3-like 
 zma-u.5   103651514   uncharacterized LOC103651514 
 vvi-u.5   100267008   uncharacterized LOC100267008 
 vvi-u.5   104879248   uncharacterized LOC104879248 
 ppo-u.5   7474050   uncharacterized LOC7474050 
 mtr-u.5   11419754   DNA-directed RNA polymerase III subunit RPC3 

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Top 50 coexpressed genes to CHLRE_16g673900v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g673900v5 (cre-r.1 coexpression data)

CoexMap"5721432"


creCHLRE_16g673900v5 | Entrez gene ID : 5721432    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 2 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03020 [list] [network] RNA polymerase (29 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (95 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (16 genes)  IEA  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (46 genes)  IEA  
Protein XP_042916139.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  chlo_mito 1  (predict for XP_042916139.1)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for XP_042916139.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g673900v5

.
ath-u.5
for
AT3G49000

.
gma-u.5
for
100803947

.
gma-u.5
for
100784750

.
sly-u.5
for
101264729

.
osa-u.5
for
4325277

.
zma-u.5
for
118474729

.
zma-u.5
for
103651514

.
vvi-u.5
for
100267008

.
vvi-u.5
for
104879248

.
ppo-u.5
for
7474050

.
mtr-u.5
for
11419754

.


Ortholog ID: 7243
Species ath gma gma sly osa zma zma bra bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G49000 LOC102663439 LOC100803947 LOC101264729 LOC4325277 LOC103651514 LOC118474729 LOC103828227 LOC103873509 LOC100267008 LOC104879248 LOC7474050 LOC11419754 LOC123078982 LOC123070579 LOC123444106 LOC107888743 LOC107892078 LOC106365520 LOC106387833 CHLRE_16g673900v5 LOC8068018 LOC102597386 LOC102613614 LOC100837993 LOC107813670 LOC107774832
Function* RNA polymerase III subunit RPC82 family protein DNA-directed RNA polymerase III subunit rpc3 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC101264729 uncharacterized LOC4325277 uncharacterized LOC103651514 DNA-directed RNA polymerase III subunit RPC3-like uncharacterized LOC103828227 uncharacterized LOC103873509 uncharacterized LOC100267008 uncharacterized LOC104879248 uncharacterized LOC7474050 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit rpc3 DNA-directed RNA polymerase III subunit RPC3 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC106365520 uncharacterized LOC106387833 uncharacterized protein DNA-directed RNA polymerase III subunit rpc3 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC102613614 DNA-directed RNA polymerase III subunit RPC3 uncharacterized LOC107813670 uncharacterized LOC107774832
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae03013 Nucleocytoplasmic transport 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae00310 Lysine degradation 3
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03020 RNA polymerase 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824061 102663439 100803947 101264729 4325277 103651514 118474729 103828227 103873509 100267008 104879248 7474050 11419754 123078982 123070579 123444106 107888743 107892078 106365520 106387833 5721432 8068018 102597386 102613614 100837993 107813670 107774832
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