ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103635758	importin subunit beta-1
zma-r.6	103635758	importin subunit beta-1
zma-u.5	100383778	uncharacterized LOC100383778
zma-u.5	103630277	importin subunit beta-1
zma-u.5	100381984	uncharacterized LOC100381984
osa-u.5	4352566	importin subunit beta-1
osa-u.5	4338508	importin subunit beta-1
osa-u.5	4332526	importin subunit beta-1
ath-u.5	AT5G53480	ARM repeat superfamily protein
ath-u.5	AT3G08943	ARM repeat superfamily protein
ath-u.5	AT3G08947	ARM repeat superfamily protein
gma-u.5	100818831	importin subunit beta-1
gma-u.5	100805445	importin subunit beta-1
gma-u.5	100785130	importin subunit beta-1
sly-u.5	101263498	importin subunit beta-1
sly-u.5	112941689	importin subunit beta-1-like
sly-u.5	101258299	importin subunit beta-1
vvi-u.5	100241948	importin subunit beta-1
vvi-u.5	100265913	importin subunit beta-1
ppo-u.5	7475174	importin subunit beta-1
ppo-u.5	7468068	importin subunit beta-1
ppo-u.5	7464283	importin subunit beta-1
mtr-u.5	25502229	importin subunit beta-1
mtr-u.5	25491133	importin subunit beta-1
mtr-u.5	25491131	importin subunit beta-1

Top 50 coexpressed genes to 103635758 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103635758 (zma-u.5 coexpression data)

CoexMap"103635758"

[Cytoscape]

Annotation

functional annotation

KEGG

zma03013 [list] [network] Nucleocytoplasmic transport (144 genes)

GO BP

GO:0006606 [list] [network] protein import into nucleus

(60 genes)

IEA

GO CC

GO MF

GO:0031267 [list] [network] small GTPase binding

(39 genes)

IEA

Protein

XP_008656358.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 1, vacu 1

(predict for XP_008656358.1)

Subcellular
localization
TargetP

other 6

(predict for XP_008656358.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103635758	zma-r.6 for 103635758	zma-u.5 for 100383778	zma-u.5 for 103630277	zma-u.5 for 100381984	osa-u.5 for 4352566	osa-u.5 for 4338508	osa-u.5 for 4332526	ath-u.5 for AT5G53480	ath-u.5 for AT3G08943	ath-u.5 for AT3G08947	gma-u.5 for 100818831	gma-u.5 for 100805445	gma-u.5 for 100785130	sly-u.5 for 101263498	sly-u.5 for 112941689	sly-u.5 for 101258299	vvi-u.5 for 100241948	vvi-u.5 for 100265913	ppo-u.5 for 7475174	ppo-u.5 for 7468068	ppo-u.5 for 7464283	mtr-u.5 for 25502229	mtr-u.5 for 25491133	mtr-u.5 for 25491131

Ortholog

Ortholog ID: 1325

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100381984

uncharacterized LOC100383778

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

ARM repeat superfamily protein

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	7
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	6
sbi00230	Purine metabolism	2
sbi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa03013	Nucleocytoplasmic transport	2
osa03060	Protein export	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	7
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae03040	Spliceosome	4
tae04120	Ubiquitin mediated proteolysis	3
tae03030	DNA replication	2
tae03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	5
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03013	Nucleocytoplasmic transport	3
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	7
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	6
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	4
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	3
vvi03013	Nucleocytoplasmic transport	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	8
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2
ppo03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	5
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	5
cit03010	Ribosome	3
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	4
cit01200	Carbon metabolism	3
cit00020	Citrate cycle (TCA cycle)	2
cit00785	Lipoic acid metabolism	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	5
nta04141	Protein processing in endoplasmic reticulum	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	3

Expression

Expression pattern

Entrez Gene ID^*

100381984

100383778

8074036

8061328

4352566

4338508

123102467

123085590

123408642

123441193

100845669

100827513

835429

3768764

100802578

100805445

101258299

112941689

103870576

103844822

100241948

100265913

7468068

7460392

25502229

25491131

107944769

107890775

106399821

111215807

102599745

102584682

102621963

102623348

107816465

107813226

5715432

The preparation time of this page was 0.1 [sec].


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	3	3	3	2	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103635758 (zma-u.5 coexpression data)

Top 50 enrichment test to 103635758 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**