ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
mtr-u.5	25502229	importin subunit beta-1
mtr-r.5	25502229	importin subunit beta-1
mtr-u.5	25491133	importin subunit beta-1
mtr-u.5	25491131	importin subunit beta-1
gma-u.5	100802578	importin subunit beta-1
gma-u.5	100818831	importin subunit beta-1
gma-u.5	100785130	importin subunit beta-1
ppo-u.5	7475174	importin subunit beta-1
ppo-u.5	7464283	importin subunit beta-1
ppo-u.5	7460392	importin subunit beta-1
ath-u.5	AT5G53480	ARM repeat superfamily protein
ath-u.5	AT3G08943	ARM repeat superfamily protein
ath-u.5	AT3G08947	ARM repeat superfamily protein
vvi-u.5	100265913	importin subunit beta-1
vvi-u.5	100241948	importin subunit beta-1
sly-u.5	101263498	importin subunit beta-1
sly-u.5	101258299	importin subunit beta-1
sly-u.5	112941689	importin subunit beta-1-like
osa-u.5	4352566	importin subunit beta-1
osa-u.5	4332526	importin subunit beta-1
osa-u.5	4338508	importin subunit beta-1
zma-u.5	100381984	uncharacterized LOC100381984
zma-u.5	103630277	importin subunit beta-1
zma-u.5	103635758	importin subunit beta-1

Top 50 coexpressed genes to 25502229 (mtr-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 25502229 (mtr-u.5 coexpression data)

CoexMap"25502229"

[Cytoscape]

Annotation

functional annotation

KEGG

mtr03013 [list] [network] Nucleocytoplasmic transport (137 genes)

GO BP

GO:0006606 [list] [network] protein import into nucleus

(54 genes)

IEA

GO CC

GO MF

GO:0031267 [list] [network] small GTPase binding

(37 genes)

IEA

Protein

XP_013447246.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 3, plas 1, vacu 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1

(predict for XP_013447246.1)

Subcellular
localization
TargetP

other 6

(predict for XP_013447246.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 25502229	mtr-r.5 for 25502229	mtr-u.5 for 25491133	mtr-u.5 for 25491131	gma-u.5 for 100802578	gma-u.5 for 100818831	gma-u.5 for 100785130	ppo-u.5 for 7475174	ppo-u.5 for 7464283	ppo-u.5 for 7460392	ath-u.5 for AT5G53480	ath-u.5 for AT3G08943	ath-u.5 for AT3G08947	vvi-u.5 for 100265913	vvi-u.5 for 100241948	sly-u.5 for 101263498	sly-u.5 for 101258299	sly-u.5 for 112941689	osa-u.5 for 4352566	osa-u.5 for 4332526	osa-u.5 for 4338508	zma-u.5 for 100381984	zma-u.5 for 103630277	zma-u.5 for 103635758

Ortholog

Ortholog ID: 1325

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

importin subunit beta-1

ARM repeat superfamily protein

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

uncharacterized LOC100381984

uncharacterized LOC100383778

importin subunit beta-1

importin subunit beta-1-like

importin subunit beta-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	7
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	8
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2
ppo03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5
ppo03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03013	Nucleocytoplasmic transport	3
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	4
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	3
vvi03013	Nucleocytoplasmic transport	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	4
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03013	Nucleocytoplasmic transport	4
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	5
cit03010	Ribosome	3
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	4
cit01200	Carbon metabolism	3
cit00020	Citrate cycle (TCA cycle)	2
cit00785	Lipoic acid metabolism	2
cit01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	6
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	5
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	5
nta04141	Protein processing in endoplasmic reticulum	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa03013	Nucleocytoplasmic transport	2
osa03060	Protein export	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03010	Ribosome	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	7
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	7
tae04148	Efferocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae03040	Spliceosome	4
tae04120	Ubiquitin mediated proteolysis	3
tae03030	DNA replication	2
tae03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	5
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	6
sbi00230	Purine metabolism	2
sbi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	3

Expression

Expression pattern

Entrez Gene ID^*

25502229

25491131

100802578

100805445

7468068

7460392

835429

3768764

103870576

103844822

100241948

100265913

107944769

107890775

106399821

111215807

102621963

102623348

101258299

112941689

102599745

102584682

107816465

107813226

4352566

4338508

100381984

100383778

123102467

123085590

123408642

123441193

8074036

8061328

100845669

100827513

5715432

The preparation time of this page was 0.2 [sec].


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	3	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 25502229 (mtr-u.5 coexpression data)

Top 50 enrichment test to 25502229 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**