ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103636297	scarecrow-like protein 3
zma-r.6	103636297	scarecrow-like protein 3
zma-u.5	100281386	GRAS family transcription factor containing protein
sbi-r.1	8081328	scarecrow-like protein 3
osa-u.5	4325838	scarecrow-like protein 3
tae-r.2	123072458	scarecrow-like protein 3
tae-r.2	123080682	scarecrow-like protein 3
tae-r.2	123063451	scarecrow-like protein 3
hvu-r.1	123445479	scarecrow-like protein 3
bdi-r.1	100832122	scarecrow-like protein 3
ath-u.5	SCL3	scarecrow-like 3
gma-u.5	100814131	scarecrow-like protein 3
gma-u.5	100819988	scarecrow-like protein 3
sly-u.5	101256615	scarecrow-like protein 3
sly-u.5	101253266	scarecrow-like protein 3
bra-r.6	103871348	scarecrow-like protein 3
bra-r.6	117125857	scarecrow-like protein 3
bra-r.6	103832878	scarecrow-like protein 3
vvi-u.5	100258442	scarecrow-like protein 3
vvi-u.5	100253019	scarecrow-like protein 3
ppo-u.5	7467395	scarecrow-like protein 3
ppo-u.5	7496014	scarecrow-like protein 3
ppo-u.5	7462773	GRAS family protein TF80
mtr-u.5	11439981	scarecrow-like protein 3
ghi-r.1	107891434	scarecrow-like protein 3
ghi-r.1	107918543	scarecrow-like protein 3
ghi-r.1	107939446	scarecrow-like protein 3
bna-r.1	106418683	scarecrow-like protein 3
bna-r.1	106406864	scarecrow-like protein 3
bna-r.1	125610102	scarecrow-like protein 3
sot-r.1	102594123	scarecrow-like protein 3
sot-r.1	102605596	scarecrow-like protein 3
cit-r.1	102620574	scarecrow-like protein 3
cit-r.1	102607699	scarecrow-like protein 3
nta-r.1	107823662	scarecrow-like protein 3
nta-r.1	107766738	scarecrow-like protein 3
nta-r.1	107818897	scarecrow-like protein 3

Top 50 coexpressed genes to 103636297 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103636297 (zma-u.5 coexpression data)

CoexMap"103636297"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_008656875.1 [sequence] [blastp]

Subcellular
localization
wolf

E.R. 3, nucl 3, E.R._plas 2, cyto 1, cysk_nucl 1

(predict for XP_008656875.1)

Subcellular
localization
TargetP

chlo 6

(predict for XP_008656875.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103636297	zma-r.6 for 103636297	zma-u.5 for 100281386	sbi-r.1 for 8081328	osa-u.5 for 4325838	tae-r.2 for 123072458	tae-r.2 for 123080682	tae-r.2 for 123063451	hvu-r.1 for 123445479	bdi-r.1 for 100832122	ath-u.5 for SCL3	gma-u.5 for 100814131	gma-u.5 for 100819988	sly-u.5 for 101256615	sly-u.5 for 101253266	bra-r.6 for 103871348	bra-r.6 for 117125857	bra-r.6 for 103832878	vvi-u.5 for 100258442	vvi-u.5 for 100253019	ppo-u.5 for 7467395	ppo-u.5 for 7496014	ppo-u.5 for 7462773	mtr-u.5 for 11439981	ghi-r.1 for 107891434	ghi-r.1 for 107918543	ghi-r.1 for 107939446	bna-r.1 for 106418683	bna-r.1 for 106406864	bna-r.1 for 125610102	sot-r.1 for 102594123	sot-r.1 for 102605596	cit-r.1 for 102620574	cit-r.1 for 102607699	nta-r.1 for 107823662	nta-r.1 for 107766738	nta-r.1 for 107818897

Ortholog

Ortholog ID: 3399

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

SCL3

Function^*

scarecrow-like protein 3

GRAS family transcription factor containing protein

scarecrow-like protein 3

scarecrow-like 3

scarecrow-like protein 3

GRAS family protein TF80

scarecrow-like protein 3

GRAS family protein TF80

scarecrow-like protein 3

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00730	Thiamine metabolism	2
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	2
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	6
gma04712	Circadian rhythm - plant	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	9
sly04016	MAPK signaling pathway - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	5
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	5

Expression

Expression pattern

Entrez Gene ID^*

103636297

100281386

8081328

4325838

123072458

123080682

123063451

123445479

100832122

841464

100814131

100819988

106798410

101256615

101253266

103871348

117125857

103832878

100258442

100253019

7467395

7496014

7462773

11439981

11444939

107939446

107945127

107889301

106406864

125610102

106439032

102594123

102605596

102620574

102607699

107823662

107766738

107818897

The preparation time of this page was 0.1 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	3	1	1	1	2	2	3	2	3	1	3	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103636297 (zma-u.5 coexpression data)

Top 50 enrichment test to 103636297 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**