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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SCL3   scarecrow-like 3 
 ath-r.7   SCL3   scarecrow-like 3 
 ath-m.9   SCL3   scarecrow-like 3 
 ath-e.2   SCL3   scarecrow-like 3 
 ath-m.4.bio   SCL3   scarecrow-like 3 
 ath-m.4.hor   SCL3   scarecrow-like 3 
 ath-m.4.lig   SCL3   scarecrow-like 3 
 ath-m.4.str   SCL3   scarecrow-like 3 
 ath-m.4.tis   SCL3   scarecrow-like 3 
 gma-u.5   106798410   GRAS family protein TF80 
 gma-u.5   100819988   scarecrow-like protein 3 
 vvi-u.5   100253019   scarecrow-like protein 3 
 vvi-u.5   100258442   scarecrow-like protein 3 
 ppo-u.5   7462773   GRAS family protein TF80 
 ppo-u.5   7467395   scarecrow-like protein 3 
 ppo-u.5   7496014   scarecrow-like protein 3 
 mtr-u.5   11439981   scarecrow-like protein 3 
 sly-u.5   101256615   scarecrow-like protein 3 
 sly-u.5   101253266   scarecrow-like protein 3 
 osa-u.5   4325838   scarecrow-like protein 3 
 zma-u.5   103636297   scarecrow-like protein 3 
 zma-u.5   100281386   GRAS family transcription factor containing protein 

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Top 50 coexpressed genes to SCL3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SCL3 (ath-u.5 coexpression data)

CoexMap"841464"


athSCL3 | Entrez gene ID : 841464      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 2 3 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009739 [list] [network] response to gibberellin  (125 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_175459.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1,  vacu 1  (predict for NP_175459.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for NP_175459.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SCL3

.
ath-r.7
for
SCL3

.
ath-m.9
for
SCL3

.
ath-e.2
for
SCL3

.
ath-m.4.bio
for
SCL3

.
ath-m.4.hor
for
SCL3

.
ath-m.4.lig
for
SCL3

.
ath-m.4.str
for
SCL3

.
ath-m.4.tis
for
SCL3

.
gma-u.5
for
106798410

.
gma-u.5
for
100819988

.
vvi-u.5
for
100253019

.
vvi-u.5
for
100258442

.
ppo-u.5
for
7462773

.
ppo-u.5
for
7467395

.
ppo-u.5
for
7496014

.
mtr-u.5
for
11439981

.
sly-u.5
for
101256615

.
sly-u.5
for
101253266

.
osa-u.5
for
4325838

.
zma-u.5
for
103636297

.
zma-u.5
for
100281386

.


Ortholog ID: 3399
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit cit bdi nta nta
Symbol SCL3 LOC100819988 LOC100814131 LOC101253266 LOC101256615 LOC4325838 LOC100281386 LOC103636297 LOC103832878 LOC103871348 LOC100253019 LOC100258442 LOC7496014 LOC7462773 LOC11439981 LOC123063451 LOC123072458 LOC123445479 LOC107939446 LOC107889301 LOC125610102 LOC106439032 LOC8081328 LOC102605596 LOC102594123 LOC102607699 LOC102620574 LOC100832122 LOC107823662 LOC107818897
Function* scarecrow-like 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 GRAS family transcription factor containing protein scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 GRAS family protein TF80 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
gma04712 Circadian rhythm - plant 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 9
sly04016 MAPK signaling pathway - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 2
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841464 100819988 100814131 101253266 101256615 4325838 100281386 103636297 103832878 103871348 100253019 100258442 7496014 7462773 11439981 123063451 123072458 123445479 107939446 107889301 125610102 106439032 8081328 102605596 102594123 102607699 102620574 100832122 107823662 107818897
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