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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107945127   scarecrow-like protein 3 
 ghi-r.1   107889301   scarecrow-like protein 3 
 ghi-r.1   107891434   scarecrow-like protein 3 
 ghi-r.1   107948739   scarecrow-like protein 3 
 ath-u.5   SCL3   scarecrow-like 3 
 bra-r.6   117125857   scarecrow-like protein 3 
 bra-r.6   103832878   scarecrow-like protein 3 
 bra-r.6   103871348   scarecrow-like protein 3 
 bna-r.1   106418683   scarecrow-like protein 3 
 bna-r.1   106406864   scarecrow-like protein 3 
 bna-r.1   106439032   scarecrow-like protein 3 
 cit-r.1   102607699   scarecrow-like protein 3 
 cit-r.1   102620574   scarecrow-like protein 3 
 gma-u.5   100800450   scarecrow-like protein 3 
 gma-u.5   100814131   scarecrow-like protein 3 
 gma-u.5   100775380   scarecrow-like protein 3 
 vvi-u.5   100258442   scarecrow-like protein 3 
 vvi-u.5   100253019   scarecrow-like protein 3 
 ppo-u.5   7496014   scarecrow-like protein 3 
 ppo-u.5   7467395   scarecrow-like protein 3 
 ppo-u.5   7462773   GRAS family protein TF80 
 mtr-u.5   11439981   scarecrow-like protein 3 
 mtr-u.5   11444939   scarecrow-like protein 3 
 sly-u.5   101253266   scarecrow-like protein 3 
 sly-u.5   101256615   scarecrow-like protein 3 
 sot-r.1   102605596   scarecrow-like protein 3 
 sot-r.1   102594123   scarecrow-like protein 3 
 nta-r.1   107823662   scarecrow-like protein 3 
 nta-r.1   107818897   scarecrow-like protein 3 
 nta-r.1   107766738   scarecrow-like protein 3 
 osa-u.5   4325838   scarecrow-like protein 3 
 zma-u.5   100281386   GRAS family transcription factor containing protein 
 zma-u.5   103636297   scarecrow-like protein 3 
 tae-r.2   123080682   scarecrow-like protein 3 
 tae-r.2   123063451   scarecrow-like protein 3 
 tae-r.2   123072458   scarecrow-like protein 3 
 hvu-r.1   123445479   scarecrow-like protein 3 
 sbi-r.1   8081328   scarecrow-like protein 3 
 bdi-r.1   100832122   scarecrow-like protein 3 

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Top 50 coexpressed genes to 107945127 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107945127 (ghi-r.1 coexpression data)

CoexMap"107945127"


ghiLOC107945127 | Entrez gene ID : 107945127    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 3 3 2 3 2 3 2 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009739 [list] [network] response to gibberellin  (63 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0043565 [list] [network] sequence-specific DNA binding  (1947 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
Protein XP_016734477.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  vacu 1  (predict for XP_016734477.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_016734477.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107945127
ghi-r.1
for
107889301
ghi-r.1
for
107891434
ghi-r.1
for
107948739
ath-u.5
for
SCL3
bra-r.6
for
117125857
bra-r.6
for
103832878
bra-r.6
for
103871348
bna-r.1
for
106418683
bna-r.1
for
106406864
bna-r.1
for
106439032
cit-r.1
for
102607699
cit-r.1
for
102620574
gma-u.5
for
100800450
gma-u.5
for
100814131
gma-u.5
for
100775380
vvi-u.5
for
100258442
vvi-u.5
for
100253019
ppo-u.5
for
7496014
ppo-u.5
for
7467395
ppo-u.5
for
7462773
mtr-u.5
for
11439981
mtr-u.5
for
11444939
sly-u.5
for
101253266
sly-u.5
for
101256615
sot-r.1
for
102605596
sot-r.1
for
102594123
nta-r.1
for
107823662
nta-r.1
for
107818897
nta-r.1
for
107766738
osa-u.5
for
4325838
zma-u.5
for
100281386
zma-u.5
for
103636297
tae-r.2
for
123080682
tae-r.2
for
123063451
tae-r.2
for
123072458
hvu-r.1
for
123445479
sbi-r.1
for
8081328
bdi-r.1
for
100832122


Ortholog ID: 3399
Species ghi ghi ghi ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC107945127 LOC107889301 LOC107939446 SCL3 LOC117125857 LOC103832878 LOC103871348 LOC106406864 LOC106439032 LOC125610102 LOC102607699 LOC102620574 LOC100814131 LOC100819988 LOC106798410 LOC100258442 LOC100253019 LOC7496014 LOC7467395 LOC7462773 LOC11439981 LOC11444939 LOC101253266 LOC101256615 LOC102605596 LOC102594123 LOC107823662 LOC107818897 LOC107766738 LOC4325838 LOC100281386 LOC103636297 LOC123080682 LOC123063451 LOC123072458 LOC123445479 LOC8081328 LOC100832122
Function* scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 GRAS family protein TF80 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 GRAS family protein TF80 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 GRAS family transcription factor containing protein scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3 scarecrow-like protein 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 5
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 6
gma04712 Circadian rhythm - plant 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 9
sly04016 MAPK signaling pathway - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 2
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 2
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107945127 107889301 107939446 841464 117125857 103832878 103871348 106406864 106439032 125610102 102607699 102620574 100814131 100819988 106798410 100258442 100253019 7496014 7467395 7462773 11439981 11444939 101253266 101256615 102605596 102594123 107823662 107818897 107766738 4325838 100281386 103636297 123080682 123063451 123072458 123445479 8081328 100832122
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