ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103654318	rhamnogalacturonate lyase B
zma-r.6	103654318	rhamnogalacturonate lyase B
zma-u.5	103643208	probable rhamnogalacturonate lyase B
zma-u.5	100286025	lyase
sbi-r.1	8057831	probable rhamnogalacturonate lyase B
osa-u.5	4349697	uncharacterized LOC4349697
osa-u.5	4346275	uncharacterized LOC4346275
osa-u.5	4346274	uncharacterized LOC4346274
hvu-r.1	123407127	probable rhamnogalacturonate lyase B
bdi-r.1	100833182	probable rhamnogalacturonate lyase B
bdi-r.1	100846621	probable rhamnogalacturonate lyase B
ath-u.5	AT2G22620	Rhamnogalacturonate lyase family protein
gma-u.5	100815677	probable rhamnogalacturonate lyase B
gma-u.5	100814721	probable rhamnogalacturonate lyase B
gma-u.5	100814185	rhamnogalacturonate lyase
sly-u.5	101260634	uncharacterized LOC101260634
sly-u.5	101250582	uncharacterized LOC101250582
sly-u.5	101267191	uncharacterized LOC101267191
bra-r.6	103837873	probable rhamnogalacturonate lyase B
bra-r.6	103864654	rhamnogalacturonate lyase
bra-r.6	103871768	probable rhamnogalacturonate lyase B
vvi-u.5	100247189	probable rhamnogalacturonate lyase B
ppo-u.5	7476448	rhamnogalacturonate lyase B
ppo-u.5	7467220	probable rhamnogalacturonate lyase B
ppo-u.5	7467219	probable rhamnogalacturonate lyase B
mtr-u.5	11422528	probable rhamnogalacturonate lyase B
mtr-u.5	11426848	rhamnogalacturonate lyase
ghi-r.1	107905134	probable rhamnogalacturonate lyase B
ghi-r.1	107902599	probable rhamnogalacturonate lyase B
bna-r.1	106415698	probable rhamnogalacturonate lyase B
bna-r.1	106441989	rhamnogalacturonate lyase
sot-r.1	102588214	probable rhamnogalacturonate lyase B
sot-r.1	102584605	probable rhamnogalacturonate lyase B
cit-r.1	102607519	probable rhamnogalacturonate lyase B
cit-r.1	102621817	probable rhamnogalacturonate lyase B
nta-r.1	107822331	uncharacterized LOC107822331
nta-r.1	107806431	uncharacterized LOC107806431
nta-r.1	107815910	uncharacterized LOC107815910

Top 50 coexpressed genes to 103654318 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103654318 (zma-u.5 coexpression data)

CoexMap"103654318"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(898 genes)

IEA

GO CC

GO MF

GO:0030246 [list] [network] carbohydrate binding	(241 genes)	IEA
GO:0003824 [list] [network] catalytic activity	(10040 genes)	IEA

Protein

XP_008679383.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, cyto_nucl 3, chlo 1, mito 1, E.R. 1, chlo_mito 1

(predict for XP_008679383.2)

Subcellular
localization
TargetP

scret 4

(predict for XP_008679383.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103654318	zma-r.6 for 103654318	zma-u.5 for 103643208	zma-u.5 for 100286025	sbi-r.1 for 8057831	osa-u.5 for 4349697	osa-u.5 for 4346275	osa-u.5 for 4346274	hvu-r.1 for 123407127	bdi-r.1 for 100833182	bdi-r.1 for 100846621	ath-u.5 for AT2G22620	gma-u.5 for 100815677	gma-u.5 for 100814721	gma-u.5 for 100814185	sly-u.5 for 101260634	sly-u.5 for 101250582	sly-u.5 for 101267191	bra-r.6 for 103837873	bra-r.6 for 103864654	bra-r.6 for 103871768	vvi-u.5 for 100247189	ppo-u.5 for 7476448	ppo-u.5 for 7467220	ppo-u.5 for 7467219	mtr-u.5 for 11422528	mtr-u.5 for 11426848	ghi-r.1 for 107905134	ghi-r.1 for 107902599	bna-r.1 for 106415698	bna-r.1 for 106441989	sot-r.1 for 102588214	sot-r.1 for 102584605	cit-r.1 for 102607519	cit-r.1 for 102621817	nta-r.1 for 107822331	nta-r.1 for 107806431	nta-r.1 for 107815910

Ortholog

Ortholog ID: 639

Species

zma

osa

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

rhamnogalacturonate lyase B