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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103829596   pentatricopeptide repeat-containing protein At5g66520 
 bna-r.1   111199372   pentatricopeptide repeat-containing protein At5g66520-like 
 bna-r.1   125589877   pentatricopeptide repeat-containing protein At5g66520-like 
 ghi-r.1   107935152   pentatricopeptide repeat-containing protein At5g66520 
 ghi-r.1   107889775   pentatricopeptide repeat-containing protein At5g66520 
 ghi-r.1   107890533   pentatricopeptide repeat-containing protein At5g66520 
 cit-r.1   102607883   pentatricopeptide repeat-containing protein At5g66520 
 gma-u.5   100801907   pentatricopeptide repeat-containing protein At5g66520 
 vvi-u.5   100254802   pentatricopeptide repeat-containing protein At5g66520 
 vvi-u.5   100244731   pentatricopeptide repeat-containing protein At5g66520 
 ppo-u.5   18098439   pentatricopeptide repeat-containing protein At5g66520 
 mtr-u.5   11413651   pentatricopeptide repeat-containing protein At5g66520 
 sly-u.5   101243689   pentatricopeptide repeat-containing protein At5g66520-like 
 sot-r.1   102601105   pentatricopeptide repeat-containing protein At5g66520-like 
 nta-r.1   107786857   pentatricopeptide repeat-containing protein At5g66520-like 
 nta-r.1   107782011   pentatricopeptide repeat-containing protein At5g66520 
 osa-u.5   4340573   pentatricopeptide repeat-containing protein At5g06540 
 zma-u.5   100280928   uncharacterized LOC100280928 
 tae-r.2   123162883   pentatricopeptide repeat-containing protein At5g06540 
 tae-r.2   123169104   pentatricopeptide repeat-containing protein At5g06540 
 hvu-r.1   123408782   pentatricopeptide repeat-containing protein At5g06540-like 
 sbi-r.1   8085697   pentatricopeptide repeat-containing protein At3g62890 
 bdi-r.1   100832227   pentatricopeptide repeat-containing protein At3g62890 

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Top 50 coexpressed genes to 103829596 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103829596 (bra-r.6 coexpression data)

CoexMap"103829596"


braLOC103829596 | Entrez gene ID : 103829596    
Species bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre ath
Paralog 1 2 3 1 1 2 1 1 1 1 2 1 1 2 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (422 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (1500 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009103519.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  vacu 1,  cysk_plas 1  (predict for XP_009103519.1)
Subcellular
localization
TargetP
other 5  (predict for XP_009103519.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103829596
bna-r.1
for
111199372
bna-r.1
for
125589877
ghi-r.1
for
107935152
ghi-r.1
for
107889775
ghi-r.1
for
107890533
cit-r.1
for
102607883
gma-u.5
for
100801907
vvi-u.5
for
100254802
vvi-u.5
for
100244731
ppo-u.5
for
18098439
mtr-u.5
for
11413651
sly-u.5
for
101243689
sot-r.1
for
102601105
nta-r.1
for
107786857
nta-r.1
for
107782011
osa-u.5
for
4340573
zma-u.5
for
100280928
tae-r.2
for
123162883
tae-r.2
for
123169104
hvu-r.1
for
123408782
sbi-r.1
for
8085697
bdi-r.1
for
100832227


Ortholog ID: 8672
Species bra bna bna ghi ghi ghi cit gma vvi vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC103829596 LOC111199372 LOC125589877 LOC107889775 LOC107890533 LOC107931463 LOC102607883 LOC100801907 LOC100254802 LOC100244731 LOC18098439 LOC11413651 LOC101243689 LOC102601105 LOC107786857 LOC107782011 LOC4340573 LOC100280928 LOC123162883 LOC123169104 LOC123408782 LOC8085697 LOC100832227
Function* pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein At5g66520-like pentatricopeptide repeat-containing protein At5g66520 pentatricopeptide repeat-containing protein At5g06540 uncharacterized LOC100280928 pentatricopeptide repeat-containing protein At5g06540 pentatricopeptide repeat-containing protein At5g06540 pentatricopeptide repeat-containing protein At5g06540-like pentatricopeptide repeat-containing protein At3g62890 pentatricopeptide repeat-containing protein At3g62890
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00051 Fructose and mannose metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 3
mtr01200 Carbon metabolism 3
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00030 Pentose phosphate pathway 2
mtr00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103829596 111199372 125589877 107889775 107890533 107931463 102607883 100801907 100254802 100244731 18098439 11413651 101243689 102601105 107786857 107782011 4340573 100280928 123162883 123169104 123408782 8085697 100832227
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