ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103835132	protein RER1A
bra-r.6	103828409	protein RER1D
bra-r.6	103842510	protein RER1B
bra-r.6	103864285	protein RER1B
bna-r.1	106357726	protein RER1D-like
bna-r.1	111198008	protein RER1A
bna-r.1	106410402	protein RER1B-like
ath-u.5	AT2G18240	Rer1 family protein
ath-u.5	RER1B	endoplasmatic reticulum retrieval protein 1B
ath-u.5	ATRER1A	Rer1 family protein
ghi-r.1	107909412	protein RER1B
ghi-r.1	107913332	protein RER1A
ghi-r.1	107927919	protein RER1A
cit-r.1	102627924	protein RER1A-like
cit-r.1	102627590	protein RER1B-like
cit-r.1	102617064	protein RER1B-like
gma-u.5	100499765	uncharacterized LOC100499765
gma-u.5	100305541	uncharacterized LOC100305541
gma-u.5	100787683	protein RER1A
vvi-u.5	100249677	protein RER1B
vvi-u.5	100255884	protein RER1A
vvi-u.5	100248585	protein RER1B
ppo-u.5	7462592	protein RER1A
ppo-u.5	7489750	protein RER1A
ppo-u.5	7454364	protein RER1B
mtr-u.5	25493491	protein RER1A
mtr-u.5	11417142	protein RER1A
mtr-u.5	11405778	protein RER1A
sly-u.5	101268521	RER1 family protein
sly-u.5	101246980	protein RER1A-like
sly-u.5	104647186	protein RER1A
sot-r.1	102585739	protein RER1A-like
sot-r.1	102590853	protein RER1B
sot-r.1	102605906	protein RER1A-like
nta-r.1	107801836	protein RER1A
nta-r.1	107806558	protein RER1A-like
nta-r.1	107811399	protein RER1B-like
osa-u.5	107275316	protein RER1A
osa-u.5	4345237	protein RER1A
osa-u.5	4326147	protein RER1A
zma-u.5	100285132	RER1A protein
zma-u.5	100194351	uncharacterized LOC100194351
zma-u.5	100284264	uncharacterized LOC100284264
tae-r.2	123172049	protein RER1B
tae-r.2	123068140	protein RER1B
tae-r.2	123156052	protein RER1A
hvu-r.1	123410419	protein RER1A-like
hvu-r.1	123442350	protein RER1B-like
hvu-r.1	123413173	protein RER1A-like
sbi-r.1	8064961	protein RER1A
sbi-r.1	110433995	protein RER1A-like
bdi-r.1	100827800	protein RER1A
bdi-r.1	100838900	protein RER1B
bdi-r.1	100827863	protein RER1A
cre-r.1	CHLRE_12g555350v5	uncharacterized protein

Top 50 coexpressed genes to 103835132 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103835132 (bra-r.6 coexpression data)

CoexMap"103835132"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006621 [list] [network] protein retention in ER lumen	(16 genes)	IEA
GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(48 genes)	IEA

GO CC

GO:0000139 [list] [network] Golgi membrane

(127 genes)

IEA

GO MF

Protein

XP_009109482.1 [sequence] [blastp]
XP_033133100.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, E.R. 2, cyto 1, golg 1	(predict for XP_009109482.1)
plas 5, E.R. 2, cyto 1, golg 1	(predict for XP_033133100.1)

Subcellular
localization
TargetP

other 9	(predict for XP_009109482.1)
other 9	(predict for XP_033133100.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103835132	bra-r.6 for 103828409	bra-r.6 for 103842510	bra-r.6 for 103864285	bna-r.1 for 106357726	bna-r.1 for 111198008	bna-r.1 for 106410402	ath-u.5 for AT2G18240	ath-u.5 for RER1B	ath-u.5 for ATRER1A	ghi-r.1 for 107909412	ghi-r.1 for 107913332	ghi-r.1 for 107927919	cit-r.1 for 102627924	cit-r.1 for 102627590	cit-r.1 for 102617064	gma-u.5 for 100499765	gma-u.5 for 100305541	gma-u.5 for 100787683	vvi-u.5 for 100249677	vvi-u.5 for 100255884	vvi-u.5 for 100248585	ppo-u.5 for 7462592	ppo-u.5 for 7489750	ppo-u.5 for 7454364	mtr-u.5 for 25493491	mtr-u.5 for 11417142	mtr-u.5 for 11405778	sly-u.5 for 101268521	sly-u.5 for 101246980	sly-u.5 for 104647186	sot-r.1 for 102585739	sot-r.1 for 102590853	sot-r.1 for 102605906	nta-r.1 for 107801836	nta-r.1 for 107806558	nta-r.1 for 107811399	osa-u.5 for 107275316	osa-u.5 for 4345237	osa-u.5 for 4326147	zma-u.5 for 100285132	zma-u.5 for 100194351	zma-u.5 for 100284264	tae-r.2 for 123172049	tae-r.2 for 123068140	tae-r.2 for 123156052	hvu-r.1 for 123410419	hvu-r.1 for 123442350	hvu-r.1 for 123413173	sbi-r.1 for 8064961	sbi-r.1 for 110433995	bdi-r.1 for 100827800	bdi-r.1 for 100838900	bdi-r.1 for 100827863	cre-r.1 for CHLRE_12g555350v5

Ortholog

Ortholog ID: 862

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RER1B

ATRER1A

Function^*

protein RER1D

protein RER1B

protein RER1A

protein RER1B-like

protein RER1D

Rer1 family protein

endoplasmatic reticulum retrieval protein 1B

Rer1 family protein

protein RER1A

protein RER1B

protein RER1A-like

protein RER1B-like

protein RER1B

uncharacterized LOC100499765

protein RER1A

Rer1 family protein

protein RER1B

protein RER1A

protein RER1B

protein RER1A

RER1 family protein

protein RER1A-like

protein RER1A

protein RER1B

protein RER1A-like

protein RER1B-like

protein RER1A

protein RER1B-like

protein RER1A

uncharacterized LOC100194351

uncharacterized LOC100284264

uncharacterized LOC100283798

protein RER1A

protein RER1A-like

protein RER1B-like

protein RER1A-like

protein RER1A

protein RER1A-like

protein RER1A

protein RER1B

protein RER1A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	6
bra04144	Endocytosis	2
bra05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2
ath03083	Polycomb repressive complex	2
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00730	Thiamine metabolism	2
ghi00740	Riboflavin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	6
cit04145	Phagosome	6
cit04142	Lysosome	4
cit03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3
gma03015	mRNA surveillance pathway	2
gma04136	Autophagy - other	2
gma04382	Cornified envelope formation	2
gma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	3
gma01250	Biosynthesis of nucleotide sugars	3
gma00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma03015	mRNA surveillance pathway	2
gma04136	Autophagy - other	2
gma04382	Cornified envelope formation	2
gma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	9
ppo04145	Phagosome	4
ppo04142	Lysosome	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo04145	Phagosome	4
ppo04142	Lysosome	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	7
mtr04145	Phagosome	7
mtr04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	7
mtr00020	Citrate cycle (TCA cycle)	4
mtr01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	5
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	5
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00510	N-Glycan biosynthesis	2
osa00513	Various types of N-glycan biosynthesis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	3
zma03420	Nucleotide excision repair	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	6
zma03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03060	Protein export	2
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2
tae00270	Cysteine and methionine metabolism	2
tae00920	Sulfur metabolism	2
tae01200	Carbon metabolism	2
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	4
bdi04145	Phagosome	2
bdi04517	IgSF CAM signaling	2
bdi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

103828409

103842510

103864285

111198008

106446374

111213828

816339

816698

830077

107931673

107936518

107942423

102627924

102627590

102609801

100499765

100805147

100499996

100249677

100248585

100241970

7461228

7464020

7471945

25493491

11417142

11405778

101268521

101246980

104647186

102590853

102605906

102601257

107768586

107762692

107760710

107275316

4345237

4326147

100194351

100284264

100283798

123148544

123163709

123164452

123410419

123442350

123413173

8064961

110433995

100827800

100838900

100827863

5719734

The preparation time of this page was 0.1 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103835132 (bra-r.6 coexpression data)

Top 50 enrichment test to 103835132 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**