ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103836847	heterogeneous nuclear ribonucleoprotein Q
bra-r.6	103841195	heterogeneous nuclear ribonucleoprotein Q
bra-r.6	103858818	heterogeneous nuclear ribonucleoprotein Q
bna-r.1	106367945	heterogeneous nuclear ribonucleoprotein Q-like
bna-r.1	111212471	heterogeneous nuclear ribonucleoprotein Q-like
bna-r.1	106376629	heterogeneous nuclear ribonucleoprotein Q-like
ath-u.5	AT3G52660	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	LIF2	RNA-binding (RRM/RBD/RNP motifs) family protein
ath-u.5	AT5G28390	RNA-binding (RRM/RBD/RNP motifs) family protein
ghi-r.1	107925682	heterogeneous nuclear ribonucleoprotein Q
ghi-r.1	107924152	heterogeneous nuclear ribonucleoprotein Q
ghi-r.1	107906689	heterogeneous nuclear ribonucleoprotein Q
cit-r.1	102618296	heterogeneous nuclear ribonucleoprotein Q
cit-r.1	102619248	heterogeneous nuclear ribonucleoprotein Q-like
cit-r.1	102619718	heterogeneous nuclear ribonucleoprotein Q
gma-u.5	100790907	heterogeneous nuclear ribonucleoprotein Q
gma-u.5	100785076	heterogeneous nuclear ribonucleoprotein Q
gma-u.5	100800974	heterogeneous nuclear ribonucleoprotein Q
vvi-u.5	100259599	heterogeneous nuclear ribonucleoprotein Q
vvi-u.5	100267377	heterogeneous nuclear ribonucleoprotein Q
vvi-u.5	100241942	heterogeneous nuclear ribonucleoprotein Q
ppo-u.5	18098111	heterogeneous nuclear ribonucleoprotein Q
ppo-u.5	18096389	heterogeneous nuclear ribonucleoprotein Q
ppo-u.5	7455357	heterogeneous nuclear ribonucleoprotein Q
mtr-u.5	25492284	heterogeneous nuclear ribonucleoprotein Q
mtr-u.5	11410526	heterogeneous nuclear ribonucleoprotein Q
mtr-u.5	11423198	heterogeneous nuclear ribonucleoprotein Q
sly-u.5	101268517	heterogeneous nuclear ribonucleoprotein Q
sly-u.5	101253016	heterogeneous nuclear ribonucleoprotein Q
sot-r.1	102604470	heterogeneous nuclear ribonucleoprotein Q
sot-r.1	102601207	heterogeneous nuclear ribonucleoprotein R
nta-r.1	107817979	heterogeneous nuclear ribonucleoprotein Q
nta-r.1	107812698	heterogeneous nuclear ribonucleoprotein Q
nta-r.1	107773309	heterogeneous nuclear ribonucleoprotein Q
osa-u.5	4348127	heterogeneous nuclear ribonucleoprotein Q
osa-u.5	4349728	heterogeneous nuclear ribonucleoprotein Q
osa-u.5	4351445	heterogeneous nuclear ribonucleoprotein Q
zma-u.5	103640663	heterogeneous nuclear ribonucleoprotein Q
zma-u.5	103647119	heterogeneous nuclear ribonucleoprotein Q
zma-u.5	100191663	uncharacterized LOC100191663
tae-r.2	123096596	heterogeneous nuclear ribonucleoprotein Q
tae-r.2	123147571	heterogeneous nuclear ribonucleoprotein Q
tae-r.2	123091669	heterogeneous nuclear ribonucleoprotein Q
hvu-r.1	123448184	heterogeneous nuclear ribonucleoprotein Q-like
hvu-r.1	123406958	heterogeneous nuclear ribonucleoprotein Q
sbi-r.1	8085622	heterogeneous nuclear ribonucleoprotein R
sbi-r.1	8071416	heterogeneous nuclear ribonucleoprotein R
sbi-r.1	8066096	heterogeneous nuclear ribonucleoprotein R
bdi-r.1	100838709	heterogeneous nuclear ribonucleoprotein Q
bdi-r.1	100834952	heterogeneous nuclear ribonucleoprotein Q
cre-r.1	CHLRE_03g169150v5	uncharacterized protein

Top 50 coexpressed genes to 103836847 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103836847 (bra-r.6 coexpression data)

CoexMap"103836847"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(4801 genes)

IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(432 genes)

IEA

Protein

XP_009111391.1 [sequence] [blastp]
XP_018510465.1 [sequence] [blastp]
XP_018510466.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_009111391.1)
nucl 9	(predict for XP_018510465.1)
nucl 9	(predict for XP_018510466.1)

Subcellular
localization
TargetP

other 8	(predict for XP_009111391.1)
other 8	(predict for XP_018510465.1)
other 8	(predict for XP_018510466.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103836847	bra-r.6 for 103841195	bra-r.6 for 103858818	bna-r.1 for 106367945	bna-r.1 for 111212471	bna-r.1 for 106376629	ath-u.5 for AT3G52660	ath-u.5 for LIF2	ath-u.5 for AT5G28390	ghi-r.1 for 107925682	ghi-r.1 for 107924152	ghi-r.1 for 107906689	cit-r.1 for 102618296	cit-r.1 for 102619248	cit-r.1 for 102619718	gma-u.5 for 100790907	gma-u.5 for 100785076	gma-u.5 for 100800974	vvi-u.5 for 100259599	vvi-u.5 for 100267377	vvi-u.5 for 100241942	ppo-u.5 for 18098111	ppo-u.5 for 18096389	ppo-u.5 for 7455357	mtr-u.5 for 25492284	mtr-u.5 for 11410526	mtr-u.5 for 11423198	sly-u.5 for 101268517	sly-u.5 for 101253016	sot-r.1 for 102604470	sot-r.1 for 102601207	nta-r.1 for 107817979	nta-r.1 for 107812698	nta-r.1 for 107773309	osa-u.5 for 4348127	osa-u.5 for 4349728	osa-u.5 for 4351445	zma-u.5 for 103640663	zma-u.5 for 103647119	zma-u.5 for 100191663	tae-r.2 for 123096596	tae-r.2 for 123147571	tae-r.2 for 123091669	hvu-r.1 for 123448184	hvu-r.1 for 123406958	sbi-r.1 for 8085622	sbi-r.1 for 8071416	sbi-r.1 for 8066096	bdi-r.1 for 100838709	bdi-r.1 for 100834952	cre-r.1 for CHLRE_03g169150v5

Ortholog

Ortholog ID: 1709

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LIF2

Function^*