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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103837816   pentatricopeptide repeat-containing protein At2g17670 
 bna-r.1   106366376   pentatricopeptide repeat-containing protein At2g17670 
 bna-r.1   106397318   pentatricopeptide repeat-containing protein At2g17670 
 ath-u.5   AT2G17670   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107918017   pentatricopeptide repeat-containing protein At2g17670 
 ghi-r.1   107937842   pentatricopeptide repeat-containing protein At2g17670 
 cit-r.1   102623003   pentatricopeptide repeat-containing protein At2g17670 
 gma-u.5   100782321   pentatricopeptide repeat-containing protein At2g17670 
 vvi-u.5   100852599   pentatricopeptide repeat-containing protein At2g17670 
 ppo-u.5   7480472   pentatricopeptide repeat-containing protein At2g17670 
 mtr-u.5   11423312   pentatricopeptide repeat-containing protein At2g17670 
 sly-u.5   101251536   pentatricopeptide repeat-containing protein At2g17670 
 sot-r.1   102587006   pentatricopeptide repeat-containing protein At2g17670 
 nta-r.1   107760967   uncharacterized LOC107760967 
 nta-r.1   107822197   pentatricopeptide repeat-containing protein At2g17670 

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Top 50 coexpressed genes to 103837816 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103837816 (bra-r.6 coexpression data)

CoexMap"103837816"


braLOC103837816 | Entrez gene ID : 103837816    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 1 2 1 2 1 1 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009112443.2 [sequence] [blastp]
XP_033136319.1 [sequence] [blastp]
XP_033136320.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  cyto 2,  chlo_mito 2  (predict for XP_009112443.2)
chlo 4,  nucl 4,  cyto 2,  chlo_mito 2  (predict for XP_033136319.1)
chlo 4,  nucl 4,  cyto 2,  chlo_mito 2  (predict for XP_033136320.1)
Subcellular
localization
TargetP
other 8  (predict for XP_009112443.2)
other 8  (predict for XP_033136319.1)
other 8  (predict for XP_033136320.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103837816
bna-r.1
for
106366376
bna-r.1
for
106397318
ath-u.5
for
AT2G17670
ghi-r.1
for
107918017
ghi-r.1
for
107937842
cit-r.1
for
102623003
gma-u.5
for
100782321
vvi-u.5
for
100852599
ppo-u.5
for
7480472
mtr-u.5
for
11423312
sly-u.5
for
101251536
sot-r.1
for
102587006
nta-r.1
for
107760967
nta-r.1
for
107822197


Ortholog ID: 13419
Species bra bna bna ath ghi ghi cit gma vvi ppo mtr sly sot nta nta
Symbol LOC103837816 LOC106366376 LOC106397318 AT2G17670 LOC107918017 LOC107937842 LOC102623003 LOC100782321 LOC100852599 LOC7480472 LOC11423312 LOC101251536 LOC102587006 LOC107760967 LOC107822197
Function* pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 pentatricopeptide repeat-containing protein At2g17670 uncharacterized LOC107760967 pentatricopeptide repeat-containing protein At2g17670
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 3
bna00860 Porphyrin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103837816 106366376 106397318 816274 107918017 107937842 102623003 100782321 100852599 7480472 11423312 101251536 102587006 107760967 107822197
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