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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103840230   AP-4 complex subunit epsilon 
 bra-r.6   103840585   AP-4 complex subunit epsilon 
 bna-r.1   106367150   AP-4 complex subunit epsilon 
 bna-r.1   106347151   AP-4 complex subunit epsilon 
 bna-r.1   125577603   AP-4 complex subunit epsilon-like 
 ath-u.5   AT1G31730   Adaptin family protein 
 ghi-r.1   107946840   AP-4 complex subunit epsilon 
 ghi-r.1   107933487   AP-4 complex subunit epsilon 
 ghi-r.1   107929444   AP-4 complex subunit epsilon 
 cit-r.1   102624704   AP-4 complex subunit epsilon 
 gma-u.5   100819573   AP-4 complex subunit epsilon 
 gma-u.5   100806914   AP-4 complex subunit epsilon 
 gma-u.5   100780202   AP-4 complex subunit epsilon 
 vvi-u.5   100249377   AP-4 complex subunit epsilon 
 ppo-u.5   18098423   AP-4 complex subunit epsilon 
 mtr-u.5   11444821   AP-4 complex subunit epsilon 
 sly-u.5   101246170   AP-4 complex subunit epsilon 
 sot-r.1   102584455   AP-4 complex subunit epsilon 
 nta-r.1   107776976   AP-4 complex subunit epsilon 
 nta-r.1   107782050   AP-4 complex subunit epsilon-like 
 osa-u.5   4324331   AP-4 complex subunit epsilon 
 zma-u.5   100383591   uncharacterized LOC100383591 
 zma-u.5   103636362   AP-4 complex subunit epsilon 
 tae-r.2   123071953   AP-4 complex subunit epsilon 
 tae-r.2   123063057   AP-4 complex subunit epsilon 
 tae-r.2   123080259   AP-4 complex subunit epsilon 
 hvu-r.1   123445199   AP-4 complex subunit epsilon 
 sbi-r.1   8059353   AP-4 complex subunit epsilon 
 bdi-r.1   100839284   AP-4 complex subunit epsilon 
 cre-r.1   CHLRE_06g310000v5   uncharacterized protein 

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Top 50 coexpressed genes to 103840230 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103840230 (bra-r.6 coexpression data)

CoexMap"103840230"


braLOC103840230 | Entrez gene ID : 103840230    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 3 1 3 1 3 1 1 1 1 1 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp04142 [list] [network] Lysosome (124 genes)
GO BP
GO:0006898 [list] [network] receptor-mediated endocytosis  (62 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (422 genes)  IEA  
GO CC
GO:0030124 [list] [network] AP-4 adaptor complex  (2 genes)  IEA  
GO:0030117 [list] [network] membrane coat  (111 genes)  IEA  
GO MF
GO:0140312 [list] [network] cargo adaptor activity  (11 genes)  IEA  
Protein XP_009114969.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1  (predict for XP_009114969.2)
Subcellular
localization
TargetP
other 8  (predict for XP_009114969.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103840230
bra-r.6
for
103840585
bna-r.1
for
106367150
bna-r.1
for
106347151
bna-r.1
for
125577603
ath-u.5
for
AT1G31730
ghi-r.1
for
107946840
ghi-r.1
for
107933487
ghi-r.1
for
107929444
cit-r.1
for
102624704
gma-u.5
for
100819573
gma-u.5
for
100806914
gma-u.5
for
100780202
vvi-u.5
for
100249377
ppo-u.5
for
18098423
mtr-u.5
for
11444821
sly-u.5
for
101246170
sot-r.1
for
102584455
nta-r.1
for
107776976
nta-r.1
for
107782050
osa-u.5
for
4324331
zma-u.5
for
100383591
zma-u.5
for
103636362
tae-r.2
for
123071953
tae-r.2
for
123063057
tae-r.2
for
123080259
hvu-r.1
for
123445199
sbi-r.1
for
8059353
bdi-r.1
for
100839284
cre-r.1
for
CHLRE_06g310000v5


Ortholog ID: 7058
Species bra bra bna bna bna ath ghi ghi ghi cit gma gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC103840230 LOC103840585 LOC106367150 LOC106347151 LOC125577603 AT1G31730 LOC107946840 LOC107933487 LOC107900692 LOC102624704 LOC100819573 LOC100806914 LOC100779276 LOC100249377 LOC18098423 LOC11444821 LOC101246170 LOC102584455 LOC107776976 LOC107782050 LOC4324331 LOC100383591 LOC103636362 LOC123071953 LOC123063057 LOC123080259 LOC123445199 LOC8059353 LOC100839284 CHLRE_06g310000v5
Function* AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon-like Adaptin family protein AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon-like AP-4 complex subunit epsilon uncharacterized LOC100383591 AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon AP-4 complex subunit epsilon uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 7
bra04142 Lysosome 5
bra05100 Bacterial invasion of epithelial cells 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra04142 Lysosome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 8
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 8
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04142 Lysosome 3
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
ghi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 4
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 4
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 3
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
sot04144 Endocytosis 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta03015 mRNA surveillance pathway 4
nta04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 6
nta03015 mRNA surveillance pathway 6
nta03013 Nucleocytoplasmic transport 4
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma04142 Lysosome 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
tae04141 Protein processing in endoplasmic reticulum 3
tae00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 4
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 3
cre04142 Lysosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103840230 103840585 106367150 106347151 125577603 840060 107946840 107933487 107900692 102624704 100819573 100806914 100779276 100249377 18098423 11444821 101246170 102584455 107776976 107782050 4324331 100383591 103636362 123071953 123063057 123080259 123445199 8059353 100839284 5716809
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