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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103844362   polyadenylate-binding protein 2 
 bra-r.6   103830833   polyadenylate-binding protein 5 
 bra-r.6   103871402   polyadenylate-binding protein 8 
 bra-r.6   103864463   polyadenylate-binding protein 4 
 bna-r.1   106381077   polyadenylate-binding protein 5-like 
 bna-r.1   125596826   polyadenylate-binding protein 2-like 
 bna-r.1   111204605   polyadenylate-binding protein 2-like 
 ath-u.5   PAB4   poly(A) binding protein 4 
 ghi-r.1   107961293   polyadenylate-binding protein 2 
 ghi-r.1   107940789   polyadenylate-binding protein 2 
 ghi-r.1   107935017   polyadenylate-binding protein 8 
 cit-r.1   PABP2   poly A-binding protein 2 
 cit-r.1   102628035   polyadenylate-binding protein 2-like 
 cit-r.1   102616823   polyadenylate-binding protein 2-like 
 gma-u.5   100811385   polyadenylate-binding protein 2 
 gma-u.5   100808877   polyadenylate-binding protein 2 
 gma-u.5   100813735   polyadenylate-binding protein 2 
 vvi-u.5   100241923   polyadenylate-binding protein 2-like 
 vvi-u.5   100255846   polyadenylate-binding protein 2-like 
 vvi-u.5   100262903   polyadenylate-binding protein 2 
 ppo-u.5   7492048   polyadenylate-binding protein 8 
 ppo-u.5   7490046   polyadenylate-binding protein 8 
 sly-u.5   101258105   polyadenylate-binding protein 8-like 
 sly-u.5   101261596   polyadenylate-binding protein 2-like 
 sly-u.5   101264108   polyadenylate-binding protein 3 
 sot-r.1   102580924   polyadenylate-binding protein 2-like 
 sot-r.1   102585145   polyadenylate-binding protein 8-like 
 nta-r.1   107761991   polyadenylate-binding protein 2-like 
 nta-r.1   107784553   polyadenylate-binding protein 8-like 
 nta-r.1   107809091   polyadenylate-binding protein 3-like 
 osa-u.5   4345242   polyadenylate-binding protein 2 
 osa-u.5   4346409   polyadenylate-binding protein 2 
 osa-u.5   4336331   polyadenylate-binding protein 2 
 zma-u.5   100502035   uncharacterized LOC100502035 
 zma-u.5   100285420   uncharacterized LOC100285420 
 zma-u.5   100383542   uncharacterized LOC100383542 
 tae-r.2   123053837   polyadenylate-binding protein 2 
 tae-r.2   123189697   polyadenylate-binding protein 2 
 tae-r.2   123168751   polyadenylate-binding protein 2 
 hvu-r.1   123427184   polyadenylate-binding protein 2-like 
 hvu-r.1   123411286   polyadenylate-binding protein 2-like 
 hvu-r.1   123398305   polyadenylate-binding protein 8-like 
 sbi-r.1   110432373   polyadenylate-binding protein 2-like 
 sbi-r.1   8075901   polyadenylate-binding protein 2 
 bdi-r.1   100829057   polyadenylate-binding protein 2 
 bdi-r.1   100828713   polyadenylate-binding protein 2 
 bdi-r.1   100827201   polyadenylate-binding protein 2 
 cre-r.1   CHLRE_01g039300v5   uncharacterized protein 

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Top 50 coexpressed genes to 103844362 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103844362 (bra-r.6 coexpression data)

CoexMap"103844362"


braLOC103844362 | Entrez gene ID : 103844362    
Species bra bna ath ghi cit gma vvi ppo sly sot nta osa zma tae hvu sbi bdi cre mtr
Paralog 4 3 1 3 3 3 3 2 3 2 3 3 3 3 3 2 3 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03015 [list] [network] mRNA surveillance pathway (205 genes)
brp03018 [list] [network] RNA degradation (187 genes)
GO BP
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (1029 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1543 genes)  IEA  
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0003730 [list] [network] mRNA 3'-UTR binding  (8 genes)  IEA  
GO:0008266 [list] [network] poly(U) RNA binding  (8 genes)  IEA  
GO:0008143 [list] [network] poly(A) binding  (10 genes)  IEA  
Protein XP_033130559.1 [sequence] [blastp]
XP_033130560.1 [sequence] [blastp]
XP_033130561.1 [sequence] [blastp]
XP_033130562.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  nucl 4,  cyto 1  (predict for XP_033130559.1)
pero 4,  nucl 4,  cyto 1  (predict for XP_033130560.1)
cyto 3,  E.R. 2,  pero 2,  cyto_nucl 2  (predict for XP_033130561.1)
cyto 4,  pero 4,  nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_033130562.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_033130559.1)
other 7,  mito 3  (predict for XP_033130560.1)
other 7,  mito 3  (predict for XP_033130561.1)
other 7,  mito 3  (predict for XP_033130562.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103844362
bra-r.6
for
103830833
bra-r.6
for
103871402
bra-r.6
for
103864463
bna-r.1
for
106381077
bna-r.1
for
125596826
bna-r.1
for
111204605
ath-u.5
for
PAB4
ghi-r.1
for
107961293
ghi-r.1
for
107940789
ghi-r.1
for
107935017
cit-r.1
for
PABP2
cit-r.1
for
102628035
cit-r.1
for
102616823
gma-u.5
for
100811385
gma-u.5
for
100808877
gma-u.5
for
100813735
vvi-u.5
for
100241923
vvi-u.5
for
100255846
vvi-u.5
for
100262903
ppo-u.5
for
7492048
ppo-u.5
for
7490046
sly-u.5
for
101258105
sly-u.5
for
101261596
sly-u.5
for
101264108
sot-r.1
for
102580924
sot-r.1
for
102585145
nta-r.1
for
107761991
nta-r.1
for
107784553
nta-r.1
for
107809091
osa-u.5
for
4345242
osa-u.5
for
4346409
osa-u.5
for
4336331
zma-u.5
for
100502035
zma-u.5
for
100285420
zma-u.5
for
100383542
tae-r.2
for
123053837
tae-r.2
for
123189697
tae-r.2
for
123168751
hvu-r.1
for
123427184
hvu-r.1
for
123411286
hvu-r.1
for
123398305
sbi-r.1
for
110432373
sbi-r.1
for
8075901
bdi-r.1
for
100829057
bdi-r.1
for
100828713
bdi-r.1
for
100827201
cre-r.1
for
CHLRE_01g039300v5


Ortholog ID: 542
Species bra bra bna bna bna ath ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo mtr sly sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi cre
Symbol LOC103844362 LOC103830833 LOC106381077 LOC106391056 LOC106432291 PAB2 LOC107935017 LOC107894289 LOC107908893 PABP2 LOC102628035 LOC102615487 LOC100784442 LOC100798998 LOC100780329 LOC100241923 LOC100255846 LOC100263065 LOC7467793 LOC18104862 LOC11429679 LOC101258105 LOC101261596 LOC101264108 LOC102580924 LOC102585145 LOC107809091 LOC107813138 LOC107814429 LOC4345242 LOC4346409 LOC4341408 LOC100502035 LOC100383542 LOC100381531 LOC123053837 LOC123157268 LOC123154688 LOC123427184 LOC123411286 LOC123398305 LOC110432373 LOC8075901 LOC100829057 LOC100828713 LOC100827201 CHLRE_01g039300v5
Function* polyadenylate-binding protein 2 polyadenylate-binding protein 5 polyadenylate-binding protein 5-like polyadenylate-binding protein 4 polyadenylate-binding protein 5-like poly(A) binding protein 2 polyadenylate-binding protein 8 polyadenylate-binding protein 8 polyadenylate-binding protein 8 poly A-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 3 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 8-like polyadenylate-binding protein 2-like polyadenylate-binding protein 3 polyadenylate-binding protein 2-like polyadenylate-binding protein 8-like polyadenylate-binding protein 3-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 5 uncharacterized LOC100502035 uncharacterized LOC100383542 Polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2-like polyadenylate-binding protein 2-like polyadenylate-binding protein 8-like polyadenylate-binding protein 2-like polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 polyadenylate-binding protein 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00250 Alanine, aspartate and glutamate metabolism 7
bna00230 Purine metabolism 5
bna01232 Nucleotide metabolism 5
bna01240 Biosynthesis of cofactors 5
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 5
ath00620 Pyruvate metabolism 4
ath00190 Oxidative phosphorylation 4
ath00020 Citrate cycle (TCA cycle) 3
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03015 mRNA surveillance pathway 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 6
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
vvi03010 Ribosome 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03015 mRNA surveillance pathway 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 4
vvi00190 Oxidative phosphorylation 2
vvi04142 Lysosome 2
vvi04145 Phagosome 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo03015 mRNA surveillance pathway 4
ppo03018 RNA degradation 4
ppo01210 2-Oxocarboxylic acid metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot01230 Biosynthesis of amino acids 2
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
sot01240 Biosynthesis of cofactors 3
sot00190 Oxidative phosphorylation 3
sot04145 Phagosome 3
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta01230 Biosynthesis of amino acids 2
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 5
osa04141 Protein processing in endoplasmic reticulum 3
osa03018 RNA degradation 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 13
osa03015 mRNA surveillance pathway 4
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 5
zma03015 mRNA surveillance pathway 4
zma03010 Ribosome 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae03015 mRNA surveillance pathway 4
tae01230 Biosynthesis of amino acids 4
tae03018 RNA degradation 3
tae00330 Arginine and proline metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 10
tae03018 RNA degradation 3
tae04814 Motor proteins 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03018 RNA degradation 3
tae04814 Motor proteins 3
tae03013 Nucleocytoplasmic transport 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 4
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi03010 Ribosome 2
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi03010 Ribosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 6
bdi03015 mRNA surveillance pathway 4
bdi03018 RNA degradation 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
bdi03015 mRNA surveillance pathway 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
cre01230 Biosynthesis of amino acids 6
cre01210 2-Oxocarboxylic acid metabolism 3
cre03013 Nucleocytoplasmic transport 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103844362 103830833 106381077 106391056 106432291 829557 107935017 107894289 107908893 102577977 102628035 102615487 100784442 100798998 100780329 100241923 100255846 100263065 7467793 18104862 11429679 101258105 101261596 101264108 102580924 102585145 107809091 107813138 107814429 4345242 4346409 4341408 100502035 100383542 100381531 123053837 123157268 123154688 123427184 123411286 123398305 110432373 8075901 100829057 100828713 100827201 5715532
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