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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103850607   tropinone reductase homolog At5g06060 
 bra-r.6   103864954   tropinone reductase homolog At2g29260, chloroplastic 
 bra-r.6   103852316   tropinone reductase homolog At1g07440 
 bra-r.6   103864964   tropinone reductase 
 bna-r.1   106438354   tropinone reductase homolog At2g29370-like 
 bna-r.1   106381339   tropinone reductase homolog At1g07440-like 
 bna-r.1   106386791   tropinone reductase homolog At1g07440 
 ath-u.5   AT1G07440   NAD(P)-binding Rossmann-fold superfamily protein 
 ath-u.5   AT5G06060   NAD(P)-binding Rossmann-fold superfamily protein 
 ghi-r.1   107891073   tropinone reductase homolog 
 ghi-r.1   107955135   tropinone reductase homolog At5g06060 
 cit-r.1   102610117   tropinone reductase homolog At2g29170-like 
 cit-r.1   102629304   tropinone reductase homolog 
 cit-r.1   102610431   tropinone reductase homolog At2g29290 
 gma-u.5   100775806   tropinone reductase homolog At5g06060 
 gma-u.5   100804946   tropinone reductase homolog At5g06060 
 gma-u.5   100803880   tropinone reductase homolog 
 vvi-u.5   104879613   tropinone reductase homolog At5g06060 
 vvi-u.5   100258048   tropinone reductase homolog At2g29290 
 vvi-u.5   100254617   tropinone reductase homolog 
 ppo-u.5   7465086   tropinone reductase homolog At5g06060 
 ppo-u.5   7467561   tropinone reductase homolog At5g06060 
 mtr-u.5   25489333   tropinone reductase homolog At5g06060 
 mtr-u.5   25489334   tropinone reductase homolog At5g06060 
 mtr-u.5   25489336   tropinone reductase homolog At5g06060 
 sly-u.5   101267296   tropinone reductase homolog At5g06060 
 sly-u.5   101246642   tropinone reductase homolog At5g06060-like 
 sot-r.1   102605816   tropinone reductase homolog At5g06060-like 
 sot-r.1   102603697   tropinone reductase homolog At5g06060-like 
 nta-r.1   107767554   tropinone reductase homolog At5g06060 
 nta-r.1   107778082   tropinone reductase homolog At5g06060 
 osa-u.5   4351037   noroxomaritidine/norcraugsodine reductase 
 osa-u.5   4351040   noroxomaritidine/norcraugsodine reductase 
 osa-u.5   4332377   tropinone reductase homolog At5g06060 
 zma-u.5   103652733   tropinone reductase homolog At1g07440 
 zma-u.5   100282692   Tropinone reductase 
 zma-u.5   100273624   uncharacterized LOC100273624 
 tae-r.2   123071766   noroxomaritidine/norcraugsodine reductase 
 tae-r.2   123080088   noroxomaritidine/norcraugsodine reductase 
 hvu-r.1   123449040   tropinone reductase homolog At5g06060-like 
 hvu-r.1   123395159   tropinone reductase homolog At2g29290-like 
 hvu-r.1   123395160   noroxomaritidine/norcraugsodine reductase-like 
 sbi-r.1   8082053   tropinone reductase homolog At2g29360 
 sbi-r.1   8073643   tropinone reductase homolog At5g06060 
 sbi-r.1   8082051   tropinone reductase homolog At2g29360 
 bdi-r.1   100823396   tropinone reductase homolog At2g29290 
 bdi-r.1   100837822   tropinone reductase homolog At2g29170 
 cre-r.1   CHLRE_16g682100v5   uncharacterized protein 

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Top 50 coexpressed genes to 103850607 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103850607 (bra-r.6 coexpression data)

CoexMap"103850607"


braLOC103850607 | Entrez gene ID : 103850607    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 2 3 3 3 2 3 2 2 2 3 3 2 3 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp00960 [list] [network] Tropane, piperidine and pyridine alkaloid biosynthesis (53 genes)
GO BP
GO CC
GO MF
GO:0016491 [list] [network] oxidoreductase activity  (1765 genes)  IEA  
Protein XP_009125632.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 2,  cyto 2,  plas 2,  E.R. 2,  E.R._plas 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_009125632.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_009125632.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103850607
bra-r.6
for
103864954
bra-r.6
for
103852316
bra-r.6
for
103864964
bna-r.1
for
106438354
bna-r.1
for
106381339
bna-r.1
for
106386791
ath-u.5
for
AT1G07440
ath-u.5
for
AT5G06060
ghi-r.1
for
107891073
ghi-r.1
for
107955135
cit-r.1
for
102610117
cit-r.1
for
102629304
cit-r.1
for
102610431
gma-u.5
for
100775806
gma-u.5
for
100804946
gma-u.5
for
100803880
vvi-u.5
for
104879613
vvi-u.5
for
100258048
vvi-u.5
for
100254617
ppo-u.5
for
7465086
ppo-u.5
for
7467561
mtr-u.5
for
25489333
mtr-u.5
for
25489334
mtr-u.5
for
25489336
sly-u.5
for
101267296
sly-u.5
for
101246642
sot-r.1
for
102605816
sot-r.1
for
102603697
nta-r.1
for
107767554
nta-r.1
for
107778082
osa-u.5
for
4351037
osa-u.5
for
4351040
osa-u.5
for
4332377
zma-u.5
for
103652733
zma-u.5
for
100282692
zma-u.5
for
100273624
tae-r.2
for
123071766
tae-r.2
for
123080088
hvu-r.1
for
123449040
hvu-r.1
for
123395159
hvu-r.1
for
123395160
sbi-r.1
for
8082053
sbi-r.1
for
8073643
sbi-r.1
for
8082051
bdi-r.1
for
100823396
bdi-r.1
for
100837822
cre-r.1
for
CHLRE_16g682100v5


Ortholog ID: 288
Species bra bra bra bna bna bna ath ath ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot nta nta nta osa osa osa zma zma zma tae hvu hvu hvu sbi sbi bdi bdi cre
Symbol LOC103852316 LOC103838721 LOC103836442 LOC106381339 LOC106380834 LOC106346533 AT5G06060 AT2G29260 LOC107959140 LOC121229570 LOC107906578 LOC102610730 LOC102613350 LOC100803880 LOC100780806 LOC100786456 LOC100258048 LOC100254617 LOC100855239 LOC7480348 LOC7487272 LOC25489333 LOC25492543 LOC25492542 LOC101267296 LOC101254516 LOC101265978 LOC102588942 LOC102595884 LOC107767554 LOC107778082 LOC107775763 LOC4351037 LOC4351040 LOC4332375 LOC103652733 LOC100282692 LOC100273624 LOC123071766 LOC123395159 LOC123395160 LOC123449694 LOC8082053 LOC8082051 LOC100823396 LOC100837913 CHLRE_16g682100v5
Function* tropinone reductase homolog At1g07440 tropinone reductase homolog At1g07440 tropinone reductase homolog At1g07450 tropinone reductase homolog At1g07440-like tropinone reductase homolog At5g06060 tropinone reductase homolog At1g07440-like NAD(P)-binding Rossmann-fold superfamily protein NAD(P)-binding Rossmann-fold superfamily protein tropinone reductase homolog At2g29260, chloroplastic tropinone reductase homolog At5g06060 tropinone reductase homolog At5g06060 tropinone reductase homolog At2g29170-like tropinone reductase homolog tropinone reductase homolog tropinone reductase tropinone reductase homolog At5g06060 tropinone reductase homolog At2g29290 tropinone reductase homolog tropinone reductase homolog At5g06060 tropinone reductase homolog At2g29290 tropinone reductase homolog tropinone reductase homolog At5g06060 tropinone reductase homolog At1g07440 tropinone reductase homolog At5g06060 tropinone reductase homolog At5g06060 tropinone reductase homolog tropinone reductase homolog At5g06060 tropinone reductase homolog At2g29260, chloroplastic-like tropinone reductase homolog At5g06060-like tropinone reductase homolog At5g06060 tropinone reductase homolog At5g06060 tropinone reductase homolog At5g06060-like noroxomaritidine/norcraugsodine reductase noroxomaritidine/norcraugsodine reductase tropinone reductase homolog At5g06060 tropinone reductase homolog At1g07440 Tropinone reductase uncharacterized LOC100273624 noroxomaritidine/norcraugsodine reductase tropinone reductase homolog At2g29290-like noroxomaritidine/norcraugsodine reductase-like noroxomaritidine/norcraugsodine reductase-like tropinone reductase homolog At2g29360 tropinone reductase homolog At2g29360 tropinone reductase homolog At2g29290 tropinone reductase homolog At5g06060 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00030 Pentose phosphate pathway 2
bra00051 Fructose and mannose metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 8
bna00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 3
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 14
ghi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit00960 Tropane, piperidine and pyridine alkaloid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 6
cit00380 Tryptophan metabolism 5
cit00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 4
vvi00196 Photosynthesis - antenna proteins 2
vvi00480 Glutathione metabolism 2
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
mtr00860 Porphyrin metabolism 3
mtr01240 Biosynthesis of cofactors 3
mtr00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00562 Inositol phosphate metabolism 3
mtr04070 Phosphatidylinositol signaling system 3
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot03010 Ribosome 2
sot00970 Aminoacyl-tRNA biosynthesis 2
sot00061 Fatty acid biosynthesis 2
sot01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
nta03040 Spliceosome 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00051 Fructose and mannose metabolism 2
nta00500 Starch and sucrose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
osa00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00940 Phenylpropanoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 2
zma00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00960 Tropane, piperidine and pyridine alkaloid biosynthesis 4
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae00350 Tyrosine metabolism 3
tae00360 Phenylalanine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 3
cre00630 Glyoxylate and dicarboxylate metabolism 2
cre00620 Pyruvate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103852316 103838721 103836442 106381339 106380834 106346533 830493 817475 107959140 121229570 107906578 102610730 102613350 100803880 100780806 100786456 100258048 100254617 100855239 7480348 7487272 25489333 25492543 25492542 101267296 101254516 101265978 102588942 102595884 107767554 107778082 107775763 4351037 4351040 4332375 103652733 100282692 100273624 123071766 123395159 123395160 123449694 8082053 8082051 100823396 100837913 5717568
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