ATTED-II : GeneCoexpression result

Species	Gene	Description
bra-r.6	103852998	TATA-binding protein-associated factor 2N
ath-u.5	AT1G20220	Alba DNA/RNA-binding protein
ath-u.5	AT1G76010	Alba DNA/RNA-binding protein
ath-u.5	AT3G07030	Alba DNA/RNA-binding protein
gma-u.5	100499751	uncharacterized LOC100499751
gma-u.5	100792158	ribonuclease P protein subunit p25-like protein
gma-u.5	100802967	ribonuclease P protein subunit p25-like protein
vvi-u.5	100254082	uncharacterized LOC100254082
vvi-u.5	100265751	uncharacterized LOC100265751
vvi-u.5	100257974	uncharacterized LOC100257974
ppo-u.5	7490625	uncharacterized LOC7490625
ppo-u.5	18096172	glycine-rich cell wall structural protein 2
ppo-u.5	7493993	uncharacterized LOC7493993
mtr-u.5	11415491	glycine-rich protein DOT1
mtr-u.5	11424590	ribonuclease P protein subunit p25-like protein
mtr-u.5	11423680	ribonuclease P protein subunit p25-like protein
sly-u.5	101258492	uncharacterized LOC101258492
sly-u.5	101248712	uncharacterized LOC101248712
osa-u.5	4347736	uncharacterized LOC4347736
osa-u.5	9269193	uncharacterized LOC9269193
osa-u.5	4331735	uncharacterized LOC4331735
zma-u.5	103625906	glycine-rich cell wall structural protein 1.8
zma-u.5	100276330	uncharacterized LOC100276330
zma-u.5	100280198	Alba DNA/RNA-binding protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1857 genes)

IEA

Protein

XP_009128148.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 3

(predict for XP_009128148.1)

Subcellular
localization
TargetP

other 8

(predict for XP_009128148.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103852998	ath-u.5 for AT1G20220	ath-u.5 for AT1G76010	ath-u.5 for AT3G07030	gma-u.5 for 100499751	gma-u.5 for 100792158	gma-u.5 for 100802967	vvi-u.5 for 100254082	vvi-u.5 for 100265751	vvi-u.5 for 100257974	ppo-u.5 for 7490625	ppo-u.5 for 18096172	ppo-u.5 for 7493993	mtr-u.5 for 11415491	mtr-u.5 for 11424590	mtr-u.5 for 11423680	sly-u.5 for 101258492	sly-u.5 for 101248712	osa-u.5 for 4347736	osa-u.5 for 9269193	osa-u.5 for 4331735	zma-u.5 for 103625906	zma-u.5 for 100276330	zma-u.5 for 100280198

Ortholog

Ortholog ID: 549

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

TATA-binding protein-associated factor 2N

pro-resilin

protein FAM98A

myosin heavy chain IB

Alba DNA/RNA-binding protein

ribonuclease P protein subunit p25-like protein

uncharacterized LOC102629394

uncharacterized LOC102611231

uncharacterized LOC100499751

protein argonaute 18

uncharacterized LOC100265751

uncharacterized LOC100254260

uncharacterized LOC7471133

glycine-rich cell wall structural protein 2

ribonuclease P protein subunit p25-like protein

uncharacterized LOC101245250

ribonuclease P protein subunit p25-like protein

uncharacterized LOC107816710

uncharacterized LOC107798331

uncharacterized LOC4347736

uncharacterized LOC4349880

H/ACA ribonucleoprotein complex subunit 1

zinc finger CCCH domain-containing protein 4

TATA-binding protein-associated factor 2N

protein argonaute 18-like

glycine-rich cell wall structural protein 1.0-like

RNA-binding protein FUS

ribonuclease P protein subunit p25-like protein

glycine-rich cell wall structural protein 1.0

glycine-rich cell wall structural protein 1.8

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra03010	Ribosome	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	5
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03083	Polycomb repressive complex	6
ghi04712	Circadian rhythm - plant	6
ghi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3
ppo03420	Nucleotide excision repair	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	12
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03015	mRNA surveillance pathway	2
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	7
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7
tae03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	4
bdi03030	DNA replication	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	2

Expression

Expression pattern

Entrez Gene ID^*

103872818

103830627

106440745

106347081

843932

838610

107905538

107928088

102629394

102611231

100499751

100804648

100265751

100254260

7471133

18096172

11424590

11418512

101245250

102579263

107816710

107798331

4347736

4349880

109944067

103641093

123084813

123093270

123400204

123447696

8070680

8077605

100833329

100830556

66054874

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103852998 (bra-r.6 coexpression data)

Top 50 enrichment test to 103852998 (bra-r.6 coexpression data)


Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	3	3	3	3	3	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103852998 (bra-r.6 coexpression data)

Top 50 enrichment test to 103852998 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**