ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103856122	40S ribosomal protein S9-1
ath-u.5	AT5G15200	Ribosomal protein S4
ath-u.5	AT5G39850	Ribosomal protein S4
gma-u.5	100810569	40S ribosomal protein S9-2
gma-u.5	100305663	putative 40S ribosomal protein S9
gma-u.5	100790098	40S ribosomal protein S9-2-like
vvi-u.5	100267189	small ribosomal subunit protein uS4y
vvi-u.5	100264515	small ribosomal subunit protein uS4y
vvi-u.5	100260300	small ribosomal subunit protein uS4y
ppo-u.5	7465257	40S ribosomal protein S9-2
ppo-u.5	7467928	40S ribosomal protein S9-2
ppo-u.5	18100626	40S ribosomal protein S9-2
mtr-u.5	25484126	40S ribosomal protein S9-2
mtr-u.5	11428102	40S ribosomal protein S9-2
mtr-u.5	11419392	40S ribosomal protein S9-2
sly-u.5	101253011	small ribosomal subunit protein uS4y
sly-u.5	101253922	small ribosomal subunit protein uS4y
sly-u.5	101257063	small ribosomal subunit protein uS4y
osa-u.5	4350869	small ribosomal subunit protein uS4y
osa-u.5	4331662	small ribosomal subunit protein uS4y
osa-u.5	9268088	small ribosomal subunit protein uS4y
zma-u.5	100282862	40S ribosomal protein S9
zma-u.5	100283332	40S ribosomal protein S9
zma-u.5	100192774	40S ribosomal protein S9-like

Top 50 coexpressed genes to 103856122 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103856122 (bra-r.6 coexpression data)

CoexMap"103856122"

[Cytoscape]

Annotation

functional annotation

KEGG

brp03010 [list] [network] Ribosome (2036 genes)

GO BP

GO:0045903 [list] [network] positive regulation of translational fidelity	(7 genes)	IEA
GO:0006412 [list] [network] translation	(893 genes)	IEA

GO CC

GO:0022627 [list] [network] cytosolic small ribosomal subunit

(168 genes)

IEA

GO MF

GO:0019843 [list] [network] rRNA binding	(120 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(649 genes)	IEA

Protein

XP_009131450.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, mito 1, plas 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1

(predict for XP_009131450.1)

Subcellular
localization
TargetP

other 7, mito 4

(predict for XP_009131450.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103856122	ath-u.5 for AT5G15200	ath-u.5 for AT5G39850	gma-u.5 for 100810569	gma-u.5 for 100305663	gma-u.5 for 100790098	vvi-u.5 for 100267189	vvi-u.5 for 100264515	vvi-u.5 for 100260300	ppo-u.5 for 7465257	ppo-u.5 for 7467928	ppo-u.5 for 18100626	mtr-u.5 for 25484126	mtr-u.5 for 11428102	mtr-u.5 for 11419392	sly-u.5 for 101253011	sly-u.5 for 101253922	sly-u.5 for 101257063	osa-u.5 for 4350869	osa-u.5 for 4331662	osa-u.5 for 9268088	zma-u.5 for 100282862	zma-u.5 for 100283332	zma-u.5 for 100192774

Ortholog

Ortholog ID: 1403

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

40S ribosomal protein S9-1

40S ribosomal protein S9-2

40S ribosomal protein S9-1

Ribosomal protein S4

40S ribosomal protein S9-2

40S ribosomal protein S9-2-like

small ribosomal subunit protein uS4y

40S ribosomal protein S9-2

small ribosomal subunit protein uS4y

40S ribosomal protein S9-2-like

40S ribosomal protein S9-2

small ribosomal subunit protein uS4y

40S ribosomal protein S9-like

40S ribosomal protein S9

40S ribosomal protein S9-2

40S ribosomal protein S9-2-like

40S ribosomal protein S9-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	11
ppo00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	21
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8
mtr03082	ATP-dependent chromatin remodeling	2
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	20
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	21
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta00230	Purine metabolism	3
nta00240	Pyrimidine metabolism	3
nta01232	Nucleotide metabolism	3
nta01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11
tae03020	RNA polymerase	3
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	17
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	18
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	17

Expression

Expression pattern

Entrez Gene ID^*

103846432

103849898

111213594

106372137

831372

833981

107914254

107926286

102625078

100810569

100790098

100264515

100267189

7471882

7465257

11419392

11428102

101253922

101257063

102594083

102584617

107761978

107805765

9268088

4331662

100192774

100283332

123102726

123044114

123425201

123451868

8063507

8063511

100832267

100832181

5727862

The preparation time of this page was 0.1 [sec].


Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103856122 (bra-r.6 coexpression data)

Top 50 enrichment test to 103856122 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**