ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103857607	ubiquitin-60S ribosomal protein L40
bra-r.6	103863453	ubiquitin
bra-r.6	103867308	ubiquitin-60S ribosomal protein L40
bna-r.1	106396497	ubiquitin-60S ribosomal protein L40
bna-r.1	106445167	ubiquitin
bna-r.1	106391656	ubiquitin-60S ribosomal protein L40
ath-u.5	AT2G36170	60S ribosomal protein L40-1
ath-u.5	UBQ1	ubiquitin extension protein 1
ghi-r.1	107951714	ubiquitin
ghi-r.1	107951713	ubiquitin-60S ribosomal protein L40
ghi-r.1	107947199	ubiquitin-60S ribosomal protein L40
cit-r.1	102615823	ubiquitin-60S ribosomal protein L40
cit-r.1	102628116	ubiquitin-60S ribosomal protein L40
gma-u.5	100794617	ubiquitin-60S ribosomal protein L40
gma-u.5	100306626	uncharacterized LOC100306626
gma-u.5	100800784	ubiquitin-60S ribosomal protein L40
vvi-u.5	100253716	ubiquitin-ribosomal protein eL40z fusion protein
vvi-u.5	100246002	ubiquitin-60S ribosomal protein L40-like
ppo-u.5	7464317	ubiquitin-60S ribosomal protein L40
ppo-u.5	7464518	ubiquitin-60S ribosomal protein L40
mtr-u.5	25483801	ubiquitin-60S ribosomal protein L40
mtr-u.5	11444753	ubiquitin-60S ribosomal protein L40
mtr-u.5	25499401	ubiquitin-60S ribosomal protein L40
sly-u.5	101265661	ubiquitin-ribosomal protein eL40 fusion protein
sly-u.5	101264240	ubiquitin-ribosomal fusion protein
sly-u.5	101262050	ubiquitin-ribosomal protein eL40 fusion protein
sot-r.1	102580286	ubiquitin-60S ribosomal protein L40
sot-r.1	102586389	ubiquitin-60S ribosomal protein L40
sot-r.1	102589413	ubiquitin-60S ribosomal protein L40
nta-r.1	107768133	ubiquitin-ribosomal protein eL40 fusion protein-like
nta-r.1	107767854	ubiquitin-ribosomal protein eL40 fusion protein
nta-r.1	107770051	ubiquitin-ribosomal protein eL40 fusion protein
osa-u.5	4347896	ubiquitin-60S ribosomal protein L40-2-like
osa-u.5	4347232	uncharacterized LOC4347232
osa-u.5	4343261	ubiquitin-ribosomal protein eL40 fusion protein
zma-u.5	100284418	Ubiquitin-60S ribosomal protein L40-like
zma-u.5	103633191	Ubiquitin-60S ribosomal protein L40-like
zma-u.5	103633261	ubiquitin-60S ribosomal protein L40-1
tae-r.2	123054568	ubiquitin
hvu-r.1	123449222	ubiquitin-60S ribosomal protein L40-1
hvu-r.1	123449106	ubiquitin-like
hvu-r.1	123446843	ubiquitin-60S ribosomal protein L40-1
sbi-r.1	8080708	ubiquitin
sbi-r.1	8085240	ubiquitin-60S ribosomal protein L40-2
sbi-r.1	8077466	ubiquitin
bdi-r.1	100835265	ubiquitin-60S ribosomal protein L40-2
bdi-r.1	100822846	ubiquitin
bdi-r.1	100828943	ubiquitin-60S ribosomal protein L40-2
cre-r.1	CHLRE_01g007051v5	ribosomal protein L40

Top 50 coexpressed genes to 103857607 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103857607 (bra-r.6 coexpression data)

CoexMap"103857607"

[Cytoscape]

Annotation

functional annotation

KEGG

brp03010 [list] [network] Ribosome (2036 genes)

brp04120 [list] [network] Ubiquitin mediated proteolysis (225 genes)

GO BP

GO:0019941 [list] [network] modification-dependent protein catabolic process	(471 genes)	IEA
GO:0016567 [list] [network] protein ubiquitination	(533 genes)	IEA
GO:0006412 [list] [network] translation	(893 genes)	IEA

GO CC

GO:0005840 [list] [network] ribosome	(658 genes)	IEA
GO:0005634 [list] [network] nucleus	(4801 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(7940 genes)	IEA

GO MF

GO:0031386 [list] [network] protein tag activity	(48 genes)	IEA
GO:0031625 [list] [network] ubiquitin protein ligase binding	(55 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(649 genes)	IEA

Protein

XP_009133066.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto_nucl 5, cyto 4, nucl 4, mito 1, pero 1, cysk 1

(predict for XP_009133066.1)

Subcellular
localization
TargetP

other 9

(predict for XP_009133066.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103857607	bra-r.6 for 103863453	bra-r.6 for 103867308	bna-r.1 for 106396497	bna-r.1 for 106445167	bna-r.1 for 106391656	ath-u.5 for AT2G36170	ath-u.5 for UBQ1	ghi-r.1 for 107951714	ghi-r.1 for 107951713	ghi-r.1 for 107947199	cit-r.1 for 102615823	cit-r.1 for 102628116	gma-u.5 for 100794617	gma-u.5 for 100306626	gma-u.5 for 100800784	vvi-u.5 for 100253716	vvi-u.5 for 100246002	ppo-u.5 for 7464317	ppo-u.5 for 7464518	mtr-u.5 for 25483801	mtr-u.5 for 11444753	mtr-u.5 for 25499401	sly-u.5 for 101265661	sly-u.5 for 101264240	sly-u.5 for 101262050	sot-r.1 for 102580286	sot-r.1 for 102586389	sot-r.1 for 102589413	nta-r.1 for 107768133	nta-r.1 for 107767854	nta-r.1 for 107770051	osa-u.5 for 4347896	osa-u.5 for 4347232	osa-u.5 for 4343261	zma-u.5 for 100284418	zma-u.5 for 103633191	zma-u.5 for 103633261	tae-r.2 for 123054568	hvu-r.1 for 123449222	hvu-r.1 for 123449106	hvu-r.1 for 123446843	sbi-r.1 for 8080708	sbi-r.1 for 8085240	sbi-r.1 for 8077466	bdi-r.1 for 100835265	bdi-r.1 for 100822846	bdi-r.1 for 100828943	cre-r.1 for CHLRE_01g007051v5

Ortholog

Ortholog ID: 561

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

UBQ1

Function^*

ubiquitin