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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7464317   ubiquitin-60S ribosomal protein L40 
 ppo-r.4   7464317   ubiquitin-60S ribosomal protein L40 
 ppo-u.5   7465258   ubiquitin-60S ribosomal protein L40 
 ppo-u.5   7464518   ubiquitin-60S ribosomal protein L40 
 gma-u.5   100306626   uncharacterized LOC100306626 
 gma-u.5   100792206   ubiquitin-60S ribosomal protein L40 
 gma-u.5   100794617   ubiquitin-60S ribosomal protein L40 
 mtr-u.5   25483801   ubiquitin-60S ribosomal protein L40 
 mtr-u.5   25499401   ubiquitin-60S ribosomal protein L40 
 mtr-u.5   11444753   ubiquitin-60S ribosomal protein L40 
 ath-u.5   AT2G36170   60S ribosomal protein L40-1 
 ath-u.5   UBQ1   ubiquitin extension protein 1 
 vvi-u.5   100246002   ubiquitin-60S ribosomal protein L40-like 
 vvi-u.5   100253716   ubiquitin-ribosomal protein eL40z fusion protein 
 sly-u.5   101262050   ubiquitin-ribosomal protein eL40 fusion protein 
 sly-u.5   101264240   ubiquitin-ribosomal fusion protein 
 sly-u.5   101265661   ubiquitin-ribosomal protein eL40 fusion protein 
 osa-u.5   4347896   ubiquitin-60S ribosomal protein L40-2-like 
 osa-u.5   4332169   ubiquitin-60S ribosomal protein L40-2-like 
 zma-u.5   103647262   ubiquitin-60S ribosomal protein L40-1 
 zma-u.5   103633261   ubiquitin-60S ribosomal protein L40-1 
 zma-u.5   103633191   Ubiquitin-60S ribosomal protein L40-like 

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Top 50 coexpressed genes to 7464317 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7464317 (ppo-u.5 coexpression data)

CoexMap"7464317"


ppoLOC7464317 | Entrez gene ID : 7464317    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 3 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03010 [list] [network] Ribosome (698 genes)
pop04120 [list] [network] Ubiquitin mediated proteolysis (184 genes)
GO BP
GO:0019941 [list] [network] modification-dependent protein catabolic process  (368 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (417 genes)  IEA  
GO:0006412 [list] [network] translation  (598 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (453 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0031386 [list] [network] protein tag activity  (34 genes)  IEA  
GO:0031625 [list] [network] ubiquitin protein ligase binding  (47 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (439 genes)  IEA  
Protein XP_002318470.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto_nucl 5,  cyto 4,  nucl 4,  mito 1,  pero 1,  cysk 1  (predict for XP_002318470.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002318470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7464317

.
ppo-r.4
for
7464317

.
ppo-u.5
for
7465258

.
ppo-u.5
for
7464518

.
gma-u.5
for
100306626

.
gma-u.5
for
100792206

.
gma-u.5
for
100794617

.
mtr-u.5
for
25483801

.
mtr-u.5
for
25499401

.
mtr-u.5
for
11444753

.
ath-u.5
for
AT2G36170

.
ath-u.5
for
UBQ1

.
vvi-u.5
for
100246002

.
vvi-u.5
for
100253716

.
sly-u.5
for
101262050

.
sly-u.5
for
101264240

.
sly-u.5
for
101265661

.
osa-u.5
for
4347896

.
osa-u.5
for
4332169

.
zma-u.5
for
103647262

.
zma-u.5
for
103633261

.
zma-u.5
for
103633191

.


Ortholog ID: 561
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae hvu ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT2G36170 UBQ1 LOC100800784 LOC100792206 LOC101244464 LOC101264240 LOC4332312 LOC100284418 LOC103647262 LOC117132554 LOC117132555 LOC100253716 LOC100246002 LOC7465258 LOC7464518 LOC25499401 LOC11444753 LOC123168513 LOC123449106 LOC107936781 LOC106391302 LOC106367820 CHLRE_01g007051v5 LOC8080708 LOC8054608 LOC102595592 LOC102586389 LOC102615823 LOC102628116 LOC100837381 LOC100828943 LOC107799554 LOC107826192
Function* 60S ribosomal protein L40-1 ubiquitin extension protein 1 ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin-ribosomal protein eL40 fusion protein ubiquitin-ribosomal fusion protein ubiquitin-ribosomal protein eL40A fusion protein Ubiquitin-60S ribosomal protein L40-like ubiquitin-60S ribosomal protein L40-1 ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin-ribosomal protein eL40z fusion protein ubiquitin-60S ribosomal protein L40-like ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin ubiquitin-like ubiquitin ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ribosomal protein L40 ubiquitin ubiquitin ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin-60S ribosomal protein L40 ubiquitin ubiquitin-60S ribosomal protein L40-2 ubiquitin-ribosomal protein eL40 fusion protein ubiquitin-ribosomal protein eL40 fusion protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 21
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 21
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma04120 Ubiquitin mediated proteolysis 2
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 20
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 18
sly00053 Ascorbate and aldarate metabolism 2
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma04120 Ubiquitin mediated proteolysis 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
bra04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 21
bra04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
tae04120 Ubiquitin mediated proteolysis 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 12
bna04120 Ubiquitin mediated proteolysis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 15
cre04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi04120 Ubiquitin mediated proteolysis 5
sbi04144 Endocytosis 2
sbi03040 Spliceosome 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi04120 Ubiquitin mediated proteolysis 4
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
bdi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
nta04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818189 824425 100800784 100792206 101244464 101264240 4332312 100284418 103647262 117132554 117132555 100253716 100246002 7465258 7464518 25499401 11444753 123168513 123449106 107936781 106391302 106367820 5725863 8080708 8054608 102595592 102586389 102615823 102628116 100837381 100828943 107799554 107826192
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