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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BHLH100   basic helix-loop-helix protein 100 
 ath-u.5   bHLH38   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   bHLH39   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ghi-r.1   107925752   transcription factor ORG2 
 ghi-r.1   107903258   transcription factor ORG2 
 ghi-r.1   107925846   transcription factor ORG2-like 
 gma-u.5   BHLH320   bHLH transcription factor bHLH320 
 gma-u.5   BHLH322   bHLH transcription factor bHLH322 
 gma-u.5   BHLH300   bHLH transcription factor bHLH300 
 mtr-u.5   25483186   transcription factor ORG2 
 mtr-u.5   11433801   transcription factor ORG2 
 mtr-u.5   25483183   transcription factor ORG2 
 sly-u.5   104644426   uncharacterized LOC104644426 
 sly-u.5   101258211   putative transcription factor SlbHLH068 
 sot-r.1   102584847   transcription factor ORG2-like 
 nta-r.1   107828068   transcription factor ORG3-like 
 nta-r.1   107796758   transcription factor ORG2-like 
 nta-r.1   107828347   transcription factor ORG2-like 
 osa-u.5   4325750   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 zma-u.5   103650720   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 zma-u.5   103636279   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 tae-r.2   123063466   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 sbi-r.1   110434161   transcription factor bHLH101-like 
 bdi-r.1   100840404   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 bdi-r.1   100838371   protein IRON-RELATED TRANSCRIPTION FACTOR 2 

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Top 50 coexpressed genes to BHLH100 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BHLH100 (ath-u.5 coexpression data)

CoexMap"103865869"


braLOC103865869 | Entrez gene ID : 103865869    
Species ath ghi gma mtr sly sot nta osa zma tae sbi bdi vvi bra cit ppo hvu cre bna
Paralog 3 3 3 3 2 1 3 1 2 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (676 genes)  IEA  
GO CC
GO:0090575 [list] [network] RNA polymerase II transcription regulator complex  (143 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (433 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009141976.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  extr 1,  cysk 1  (predict for XP_009141976.1)
Subcellular
localization
TargetP
other 8  (predict for XP_009141976.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
BHLH100
ath-u.5
for
bHLH38
ath-u.5
for
bHLH39
ghi-r.1
for
107925752
ghi-r.1
for
107903258
ghi-r.1
for
107925846
gma-u.5
for
BHLH320
gma-u.5
for
BHLH322
gma-u.5
for
BHLH300
mtr-u.5
for
25483186
mtr-u.5
for
11433801
mtr-u.5
for
25483183
sly-u.5
for
104644426
sly-u.5
for
101258211
sot-r.1
for
102584847
nta-r.1
for
107828068
nta-r.1
for
107796758
nta-r.1
for
107828347
osa-u.5
for
4325750
zma-u.5
for
103650720
zma-u.5
for
103636279
tae-r.2
for
123063466
sbi-r.1
for
110434161
bdi-r.1
for
100840404
bdi-r.1
for
100838371


Ortholog ID: 917
Species bra ath ath ath ghi ghi ghi gma gma gma mtr mtr mtr sly sly sot nta nta nta osa zma zma tae hvu sbi bdi bdi
Symbol LOC103863074 BHLH100 bHLH38 bHLH39 LOC107903258 LOC107925846 LOC107961387 BHLH320 BHLH322 BHLH300 LOC25483186 LOC11433801 LOC25483183 LOC104644426 LOC101258211 LOC102584847 LOC107828068 LOC107796758 LOC107796757 LOC4325750 LOC103650720 LOC103636279 LOC123072532 LOC123445544 LOC110434161 LOC100840404 LOC100838371
Function* transcription factor ORG2 basic helix-loop-helix protein 100 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor ORG2 transcription factor ORG2-like transcription factor ORG2 bHLH transcription factor bHLH320 bHLH transcription factor bHLH322 bHLH transcription factor bHLH300 transcription factor ORG2 transcription factor ORG2 transcription factor ORG2 uncharacterized LOC104644426 putative transcription factor SlbHLH068 transcription factor ORG2-like transcription factor ORG3-like transcription factor ORG2-like transcription factor ORG2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2-like transcription factor bHLH101-like protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 2
mtr01240 Biosynthesis of cofactors 2
mtr04142 Lysosome 2
mtr00941 Flavonoid biosynthesis 2
mtr04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 2
mtr00740 Riboflavin metabolism 2
mtr01240 Biosynthesis of cofactors 2
mtr04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 3
hvu00999 Biosynthesis of various plant secondary metabolites 3
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00270 Cysteine and methionine metabolism 2
bdi00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103863074 818723 824864 824865 107903258 107925846 107961387 100803424 102667275 100790212 25483186 11433801 25483183 104644426 101258211 102584847 107828068 107796758 107796757 4325750 103650720 103636279 123072532 123445544 110434161 100840404 100838371
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