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Orthologous genes in OrthoFinder**

Species Gene Description
 nta-r.1   107796758   transcription factor ORG2-like 
 nta-r.1   107796757   transcription factor ORG2 
 sly-u.5   101258211   putative transcription factor SlbHLH068 
 sly-u.5   104644426   uncharacterized LOC104644426 
 sot-r.1   102584847   transcription factor ORG2-like 
 ath-u.5   BHLH100   basic helix-loop-helix protein 100 
 ath-u.5   bHLH38   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   bHLH39   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   BHLH300   bHLH transcription factor bHLH300 
 gma-u.5   BHLH320   bHLH transcription factor bHLH320 
 gma-u.5   BHLH322   bHLH transcription factor bHLH322 
 bra-r.6   103848954   transcription factor ORG2 
 mtr-u.5   25483186   transcription factor ORG2 
 mtr-u.5   25483183   transcription factor ORG2 
 mtr-u.5   11433801   transcription factor ORG2 
 ghi-r.1   107925846   transcription factor ORG2-like 
 ghi-r.1   107961387   transcription factor ORG2 
 ghi-r.1   107925752   transcription factor ORG2 
 osa-u.5   4325750   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 zma-u.5   103650720   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 zma-u.5   103636279   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 tae-r.2   123063466   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 sbi-r.1   110434161   transcription factor bHLH101-like 
 bdi-r.1   100838371   protein IRON-RELATED TRANSCRIPTION FACTOR 2 
 bdi-r.1   100840404   protein IRON-RELATED TRANSCRIPTION FACTOR 2 

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Top 50 coexpressed genes to 107796758 (nta-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107796758 (nta-r.1 coexpression data)

CoexMap"107796758"


ntaLOC107796758 | Entrez gene ID : 107796758    
Species nta sly sot ath gma bra mtr ghi osa zma tae sbi bdi cre ppo cit bna hvu vvi
Paralog 2 2 1 3 3 1 3 3 1 2 1 1 2 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (712 genes)  IEA  
GO CC
GO:0090575 [list] [network] RNA polymerase II transcription regulator complex  (168 genes)  IEA  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (394 genes)  IEA  
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (454 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1129 genes)  IEA  
Protein XP_016475054.1 [sequence] [blastp]
XP_016475055.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  chlo 1,  cyto 1,  extr 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for XP_016475054.1)
nucl 5,  cyto_nucl 4,  chlo 1,  cyto 1,  extr 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for XP_016475055.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for XP_016475054.1)
chlo 5,  other 3  (predict for XP_016475055.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

nta-r.1
for
107796758
nta-r.1
for
107796757
sly-u.5
for
101258211
sly-u.5
for
104644426
sot-r.1
for
102584847
ath-u.5
for
BHLH100
ath-u.5
for
bHLH38
ath-u.5
for
bHLH39
gma-u.5
for
BHLH300
gma-u.5
for
BHLH320
gma-u.5
for
BHLH322
bra-r.6
for
103848954
mtr-u.5
for
25483186
mtr-u.5
for
25483183
mtr-u.5
for
11433801
ghi-r.1
for
107925846
ghi-r.1
for
107961387
ghi-r.1
for
107925752
osa-u.5
for
4325750
zma-u.5
for
103650720
zma-u.5
for
103636279
tae-r.2
for
123063466
sbi-r.1
for
110434161
bdi-r.1
for
100838371
bdi-r.1
for
100840404


Ortholog ID: 917
Species nta nta nta sly sly sot ath ath ath gma gma gma bra mtr mtr mtr ghi ghi ghi osa zma zma tae hvu sbi bdi bdi
Symbol LOC107796758 LOC107796757 LOC107828068 LOC101258211 LOC104644426 LOC102584847 BHLH100 bHLH38 bHLH39 BHLH300 BHLH320 BHLH322 LOC103863074 LOC25483186 LOC25483183 LOC11433801 LOC107925846 LOC107961387 LOC107903258 LOC4325750 LOC103650720 LOC103636279 LOC123072532 LOC123445544 LOC110434161 LOC100838371 LOC100840404
Function* transcription factor ORG2-like transcription factor ORG2 transcription factor ORG3-like putative transcription factor SlbHLH068 uncharacterized LOC104644426 transcription factor ORG2-like basic helix-loop-helix protein 100 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein bHLH transcription factor bHLH300 bHLH transcription factor bHLH320 bHLH transcription factor bHLH322 transcription factor ORG2 transcription factor ORG2 transcription factor ORG2 transcription factor ORG2 transcription factor ORG2-like transcription factor ORG2 transcription factor ORG2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2-like transcription factor bHLH101-like protein IRON-RELATED TRANSCRIPTION FACTOR 2 protein IRON-RELATED TRANSCRIPTION FACTOR 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04712 Circadian rhythm - plant 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 2
mtr01240 Biosynthesis of cofactors 2
mtr04142 Lysosome 2
mtr00941 Flavonoid biosynthesis 2
mtr04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 2
mtr00740 Riboflavin metabolism 2
mtr01240 Biosynthesis of cofactors 2
mtr04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 3
hvu00999 Biosynthesis of various plant secondary metabolites 3
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00270 Cysteine and methionine metabolism 2
bdi00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107796758 107796757 107828068 101258211 104644426 102584847 818723 824864 824865 100790212 100803424 102667275 103863074 25483186 25483183 11433801 107925846 107961387 107903258 4325750 103650720 103636279 123072532 123445544 110434161 100838371 100840404
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