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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103871650   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 bna-r.1   106351182   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 bna-r.1   106412290   U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like 
 ath-u.5   AT1G09230   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ghi-r.1   107961890   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 ghi-r.1   107892375   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 cit-r.1   102629476   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 gma-u.5   100818499   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 gma-u.5   100814307   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 vvi-u.5   100247346   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 vvi-u.5   100243611   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 ppo-u.5   7489651   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 ppo-u.5   7469865   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 mtr-u.5   11435764   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 sly-u.5   101247760   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 sot-r.1   102602989   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 nta-r.1   107777783   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 nta-r.1   107777363   U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like 
 osa-u.5   4332713   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 zma-u.5   100193767   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 tae-r.2   123181258   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 tae-r.2   123132065   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 tae-r.2   123122649   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 hvu-r.1   123432643   U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like 
 sbi-r.1   8083683   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 bdi-r.1   100832030   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 

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Top 50 coexpressed genes to 103871650 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103871650 (bra-r.6 coexpression data)

CoexMap"103871650"


braLOC103871650 | Entrez gene ID : 103871650    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 1 2 1 2 2 2 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (258 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (30 genes)  IEA  
GO MF
GO:0030626 [list] [network] U12 snRNA binding  (1 genes)  IEA  
GO:0097157 [list] [network] pre-mRNA intronic binding  (3 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009148173.1 [sequence] [blastp]
XP_009148174.1 [sequence] [blastp]
XP_033148897.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3  (predict for XP_009148173.1)
cyto 6,  chlo 3  (predict for XP_009148174.1)
cyto 6,  chlo 3  (predict for XP_033148897.1)
Subcellular
localization
TargetP
other 8  (predict for XP_009148173.1)
other 8  (predict for XP_009148174.1)
other 8  (predict for XP_033148897.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103871650
bna-r.1
for
106351182
bna-r.1
for
106412290
ath-u.5
for
AT1G09230
ghi-r.1
for
107961890
ghi-r.1
for
107892375
cit-r.1
for
102629476
gma-u.5
for
100818499
gma-u.5
for
100814307
vvi-u.5
for
100247346
vvi-u.5
for
100243611
ppo-u.5
for
7489651
ppo-u.5
for
7469865
mtr-u.5
for
11435764
sly-u.5
for
101247760
sot-r.1
for
102602989
nta-r.1
for
107777783
nta-r.1
for
107777363
osa-u.5
for
4332713
zma-u.5
for
100193767
tae-r.2
for
123181258
tae-r.2
for
123132065
tae-r.2
for
123122649
hvu-r.1
for
123432643
sbi-r.1
for
8083683
bdi-r.1
for
100832030


Ortholog ID: 9206
Species bra bna bna ath ghi ghi cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103871650 LOC106351182 LOC106412290 AT1G09230 LOC107961890 LOC107892375 LOC102629476 LOC100818499 LOC100814307 LOC100247346 LOC100243611 LOC7489651 LOC7469865 LOC11435764 LOC101247760 LOC102602989 LOC107777783 LOC107777363 LOC4332713 LOC100193767 LOC123181258 LOC123132065 LOC123047475 LOC123432643 LOC8083683 LOC100832030
Function* U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like RNA-binding (RRM/RBD/RNP motifs) family protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03040 Spliceosome 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr03018 RNA degradation 3
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03250 Viral life cycle - HIV-1 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103871650 106351182 106412290 837443 107961890 107892375 102629476 100818499 100814307 100247346 100243611 7489651 7469865 11435764 101247760 102602989 107777783 107777363 4332713 100193767 123181258 123132065 123047475 123432643 8083683 100832030
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