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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7469865   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 ppo-r.4   7469865   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 ppo-u.5   7489651   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 gma-u.5   100818499   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 gma-u.5   100814307   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 mtr-u.5   11435764   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 ath-u.5   AT1G09230   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100243611   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 vvi-u.5   100247346   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 sly-u.5   101247760   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 osa-u.5   4332713   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 
 zma-u.5   100193767   U11/U12 small nuclear ribonucleoprotein 65 kDa protein 

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Top 50 coexpressed genes to 7469865 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7469865 (ppo-u.5 coexpression data)

CoexMap"7469865"


ppoLOC7469865 | Entrez gene ID : 7469865    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 2 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (24 genes)  IEA  
GO MF
GO:0030626 [list] [network] U12 snRNA binding  (2 genes)  IEA  
GO:0097157 [list] [network] pre-mRNA intronic binding  (3 genes)  IEA  
Protein XP_052305262.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_052305262.1)
Subcellular
localization
TargetP
other 7  (predict for XP_052305262.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7469865

.
ppo-r.4
for
7469865

.
ppo-u.5
for
7489651

.
gma-u.5
for
100818499

.
gma-u.5
for
100814307

.
mtr-u.5
for
11435764

.
ath-u.5
for
AT1G09230

.
vvi-u.5
for
100243611

.
vvi-u.5
for
100247346

.
sly-u.5
for
101247760

.
osa-u.5
for
4332713

.
zma-u.5
for
100193767

.


Ortholog ID: 9206
Species ath gma gma sly osa zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT1G09230 LOC100818499 LOC100814307 LOC101247760 LOC4332713 LOC100193767 LOC103871650 LOC100247346 LOC100243611 LOC7469865 LOC7489651 LOC11435764 LOC123047475 LOC123132065 LOC123432643 LOC107961890 LOC107892375 LOC106412290 LOC106351182 LOC8083683 LOC102602989 LOC102629476 LOC100832030 LOC107777363 LOC107777783
Function* RNA-binding (RRM/RBD/RNP motifs) family protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like U11/U12 small nuclear ribonucleoprotein 65 kDa protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr03018 RNA degradation 3
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03040 Spliceosome 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03250 Viral life cycle - HIV-1 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837443 100818499 100814307 101247760 4332713 100193767 103871650 100247346 100243611 7469865 7489651 11435764 123047475 123132065 123432643 107961890 107892375 106412290 106351182 8083683 102602989 102629476 100832030 107777363 107777783
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