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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103874039   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 bna-r.1   106443943   pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like 
 bna-r.1   106348162   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 ath-u.5   DG1   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107913293   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 ghi-r.1   107899277   pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like 
 cit-r.1   102624719   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 gma-u.5   102668682   pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like 
 gma-u.5   100801996   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 vvi-u.5   104878586   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 ppo-u.5   7465564   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 mtr-u.5   11426176   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 sly-u.5   112940952   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 sot-r.1   102592656   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 nta-r.1   107784842   pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like 
 nta-r.1   107775058   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 osa-u.5   4338388   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 zma-u.5   101027256   uncharacterized LOC101027256 
 tae-r.2   123060552   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 tae-r.2   123077638   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 hvu-r.1   123413288   pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like 
 hvu-r.1   123443059   pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like 
 sbi-r.1   8066241   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 
 bdi-r.1   100830288   pentatricopeptide repeat-containing protein At5g67570, chloroplastic 

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Top 50 coexpressed genes to 103874039 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103874039 (bra-r.6 coexpression data)

CoexMap"103874039"


braLOC103874039 | Entrez gene ID : 103874039    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 2 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009658 [list] [network] chloroplast organization  (90 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (845 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009150689.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1  (predict for XP_009150689.2)
Subcellular
localization
TargetP
other 8  (predict for XP_009150689.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103874039
bna-r.1
for
106443943
bna-r.1
for
106348162
ath-u.5
for
DG1
ghi-r.1
for
107913293
ghi-r.1
for
107899277
cit-r.1
for
102624719
gma-u.5
for
102668682
gma-u.5
for
100801996
vvi-u.5
for
104878586
ppo-u.5
for
7465564
mtr-u.5
for
11426176
sly-u.5
for
112940952
sot-r.1
for
102592656
nta-r.1
for
107784842
nta-r.1
for
107775058
osa-u.5
for
4338388
zma-u.5
for
101027256
tae-r.2
for
123060552
tae-r.2
for
123077638
hvu-r.1
for
123413288
hvu-r.1
for
123443059
sbi-r.1
for
8066241
bdi-r.1
for
100830288


Ortholog ID: 10425
Species bra bna bna ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu hvu sbi bdi
Symbol LOC103874039 LOC106443943 LOC106348162 DG1 LOC107913293 LOC107899277 LOC102624719 LOC102668682 LOC100801996 LOC104878586 LOC7465564 LOC11426176 LOC112940952 LOC102592656 LOC107784842 LOC107775058 LOC4338388 LOC101027256 LOC123060552 LOC123077638 LOC123413288 LOC123443059 LOC8066241 LOC100830288
Function* pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like pentatricopeptide repeat-containing protein At5g67570, chloroplastic Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic uncharacterized LOC101027256 pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like pentatricopeptide repeat-containing protein At5g67570, chloroplastic pentatricopeptide repeat-containing protein At5g67570, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 3
mtr00564 Glycerophospholipid metabolism 2
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00450 Selenocompound metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103874039 106443943 106348162 836893 107913293 107899277 102624719 102668682 100801996 104878586 7465564 11426176 112940952 102592656 107784842 107775058 4338388 101027256 123060552 123077638 123413288 123443059 8066241 100830288
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