ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103875335	homocysteine S-methyltransferase 1
bra-r.6	103842126	selenocysteine Se-methyltransferase-like
bra-r.6	103862723	selenocysteine Se-methyltransferase
bra-r.6	103869013	homocysteine S-methyltransferase 3
bna-r.1	106444935	selenocysteine Se-methyltransferase
bna-r.1	106349415	homocysteine S-methyltransferase 1
ath-u.5	HMT-1	Homocysteine S-methyltransferase family protein
ath-u.5	HMT3	homocysteine S-methyltransferase 3
ath-u.5	HMT2	homocysteine methyltransferase 2
ghi-r.1	107951360	homocysteine S-methyltransferase 2
ghi-r.1	107927633	homocysteine S-methyltransferase 3
ghi-r.1	107914791	homocysteine S-methyltransferase 2
cit-r.1	102628438	selenocysteine methyltransferase
cit-r.1	102614076	homocysteine S-methyltransferase 1
cit-r.1	102618286	homocysteine S-methyltransferase 3
gma-u.5	100812265	homocysteine S-methyltransferase 1
gma-u.5	100811127	homocysteine S-methyltransferase 3-like
gma-u.5	100790567	selenocysteine methyltransferase
vvi-u.5	100264835	homocysteine S-methyltransferase 3
vvi-u.5	100852835	homocysteine S-methyltransferase 2
vvi-u.5	100247323	homocysteine S-methyltransferase 1
ppo-u.5	7480020	homocysteine S-methyltransferase 2
ppo-u.5	7474182	homocysteine S-methyltransferase 3
ppo-u.5	7467500	homocysteine S-methyltransferase 3
mtr-u.5	25499146	selenocysteine methyltransferase
mtr-u.5	25485172	homocysteine S-methyltransferase 3
mtr-u.5	11422561	homocysteine S-methyltransferase 1
sly-u.5	101251816	homocysteine S-methyltransferase 2
sly-u.5	101262954	homocysteine S-methyltransferase 2
sot-r.1	102595885	homocysteine S-methyltransferase 2
sot-r.1	102595383	homocysteine S-methyltransferase 2-like
nta-r.1	107831596	homocysteine S-methyltransferase 2
nta-r.1	107799272	homocysteine S-methyltransferase 1
nta-r.1	107798163	homocysteine S-methyltransferase 1
osa-u.5	4332095	homocysteine S-methyltransferase 1
osa-u.5	4348656	homocysteine S-methyltransferase 2
zma-u.5	541876	homocysteine S-methyltransferase 4
zma-u.5	541873	homocysteine S-methyltransferase 1
zma-u.5	541874	homocysteine S-methyltransferase-2
tae-r.2	123062208	homocysteine S-methyltransferase 4
tae-r.2	123074822	homocysteine S-methyltransferase 4
tae-r.2	123098214	homocysteine S-methyltransferase 1
hvu-r.1	123451848	homocysteine S-methyltransferase 3-like
hvu-r.1	123449286	homocysteine S-methyltransferase 1
sbi-r.1	8056874	homocysteine S-methyltransferase 1
sbi-r.1	8070125	homocysteine S-methyltransferase 3
bdi-r.1	100841399	homocysteine S-methyltransferase 1
bdi-r.1	100838685	homocysteine S-methyltransferase 4
bdi-r.1	100836808	homocysteine S-methyltransferase 3
cre-r.1	CHLRE_10g455650v5	uncharacterized protein

Top 50 coexpressed genes to 103875335 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103875335 (bra-r.6 coexpression data)

CoexMap"103875335"

[Cytoscape]

Annotation

functional annotation

KEGG

brp00270 [list] [network] Cysteine and methionine metabolism (193 genes)

brp00670 [list] [network] One carbon pool by folate (64 genes)

brp04981 [list] [network] Folate transport and metabolism (55 genes)

GO BP

GO:0033528 [list] [network] S-methylmethionine cycle	(4 genes)	IEA
GO:0009086 [list] [network] methionine biosynthetic process	(30 genes)	IEA

GO CC

GO MF

GO:0008898 [list] [network] S-adenosylmethionine-homocysteine S-methyltransferase activity	(4 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(1500 genes)	IEA

Protein

XP_009152100.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 1, nucl 1, golg 1, chlo_mito 1

(predict for XP_009152100.1)

Subcellular
localization
TargetP

other 8

(predict for XP_009152100.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103875335	bra-r.6 for 103842126	bra-r.6 for 103862723	bra-r.6 for 103869013	bna-r.1 for 106444935	bna-r.1 for 106349415	ath-u.5 for HMT-1	ath-u.5 for HMT3	ath-u.5 for HMT2	ghi-r.1 for 107951360	ghi-r.1 for 107927633	ghi-r.1 for 107914791	cit-r.1 for 102628438	cit-r.1 for 102614076	cit-r.1 for 102618286	gma-u.5 for 100812265	gma-u.5 for 100811127	gma-u.5 for 100790567	vvi-u.5 for 100264835	vvi-u.5 for 100852835	vvi-u.5 for 100247323	ppo-u.5 for 7480020	ppo-u.5 for 7474182	ppo-u.5 for 7467500	mtr-u.5 for 25499146	mtr-u.5 for 25485172	mtr-u.5 for 11422561	sly-u.5 for 101251816	sly-u.5 for 101262954	sot-r.1 for 102595885	sot-r.1 for 102595383	nta-r.1 for 107831596	nta-r.1 for 107799272	nta-r.1 for 107798163	osa-u.5 for 4332095	osa-u.5 for 4348656	zma-u.5 for 541876	zma-u.5 for 541873	zma-u.5 for 541874	tae-r.2 for 123062208	tae-r.2 for 123074822	tae-r.2 for 123098214	hvu-r.1 for 123451848	hvu-r.1 for 123449286	sbi-r.1 for 8056874	sbi-r.1 for 8070125	bdi-r.1 for 100841399	bdi-r.1 for 100838685	bdi-r.1 for 100836808	cre-r.1 for CHLRE_10g455650v5

Ortholog

Ortholog ID: 1543

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

HMT-1

HMT3

HMT2

Function^*

homocysteine S-methyltransferase 1

selenocysteine Se-methyltransferase-like

homocysteine S-methyltransferase 3

selenocysteine Se-methyltransferase-like

Homocysteine S-methyltransferase family protein

homocysteine S-methyltransferase 3

homocysteine methyltransferase 2

homocysteine S-methyltransferase 2

homocysteine S-methyltransferase 1

selenocysteine methyltransferase

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 3

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 3-like

selenocysteine methyltransferase

homocysteine S-methyltransferase 3

homocysteine S-methyltransferase 2

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 3

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 2

selenocysteine methyltransferase

homocysteine S-methyltransferase 3

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 2

homocysteine S-methyltransferase 2-like

homocysteine S-methyltransferase 2

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 2

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase-2

homocysteine S-methyltransferase 4

homocysteine S-methyltransferase 3

homocysteine S-methyltransferase 3-like

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 3

homocysteine S-methyltransferase 1

homocysteine S-methyltransferase 4

homocysteine S-methyltransferase 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01210	2-Oxocarboxylic acid metabolism	7
bra00966	Glucosinolate biosynthesis	6
bra00270	Cysteine and methionine metabolism	2
bra00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4
bna00670	One carbon pool by folate	4
bna04981	Folate transport and metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01210	2-Oxocarboxylic acid metabolism	10
ath00966	Glucosinolate biosynthesis	8
ath00290	Valine, leucine and isoleucine biosynthesis	3
ath00270	Cysteine and methionine metabolism	3
ath01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi00670	One carbon pool by folate	2
ghi04981	Folate transport and metabolism	2
ghi00052	Galactose metabolism	2
ghi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi00670	One carbon pool by folate	2
ghi04981	Folate transport and metabolism	2
ghi00052	Galactose metabolism	2
ghi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi00670	One carbon pool by folate	2
ghi04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2
cit03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	3
cit00670	One carbon pool by folate	2
cit04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	3
cit00670	One carbon pool by folate	2
cit04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00920	Sulfur metabolism	3
gma01320	Sulfur cycle	3
gma00670	One carbon pool by folate	3
gma04981	Folate transport and metabolism	3
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	3
gma00920	Sulfur metabolism	3
gma00270	Cysteine and methionine metabolism	3
gma01240	Biosynthesis of cofactors	2
gma00760	Nicotinate and nicotinamide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2
vvi00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	3
vvi00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00670	One carbon pool by folate	3
ppo00270	Cysteine and methionine metabolism	2
ppo04981	Folate transport and metabolism	2
ppo00920	Sulfur metabolism	2
ppo01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01230	Biosynthesis of amino acids	7
ppo00270	Cysteine and methionine metabolism	7
ppo00260	Glycine, serine and threonine metabolism	6
ppo01200	Carbon metabolism	6
ppo00670	One carbon pool by folate	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	7
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	4
mtr00520	Amino sugar and nucleotide sugar metabolism	3
mtr00270	Cysteine and methionine metabolism	2
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01230	Biosynthesis of amino acids	10
mtr00670	One carbon pool by folate	7
mtr00270	Cysteine and methionine metabolism	6
mtr01240	Biosynthesis of cofactors	4
mtr01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00400	Phenylalanine, tyrosine and tryptophan biosynthesis	8
sly01230	Biosynthesis of amino acids	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	2
sot03010	Ribosome	2
sot04141	Protein processing in endoplasmic reticulum	2
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	7
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00330	Arginine and proline metabolism	2
nta00270	Cysteine and methionine metabolism	2
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	2
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00330	Arginine and proline metabolism	6
nta00670	One carbon pool by folate	4
nta00280	Valine, leucine and isoleucine degradation	4
nta00270	Cysteine and methionine metabolism	3
nta00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	8
osa01230	Biosynthesis of amino acids	6
osa00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
osa00360	Phenylalanine metabolism	4
osa00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01230	Biosynthesis of amino acids	4
osa00920	Sulfur metabolism	3
osa01320	Sulfur cycle	3
osa00220	Arginine biosynthesis	2
osa01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00920	Sulfur metabolism	4
zma00270	Cysteine and methionine metabolism	3
zma00670	One carbon pool by folate	2
zma01230	Biosynthesis of amino acids	2
zma04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	6
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3
tae00670	One carbon pool by folate	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	4
tae04075	Plant hormone signal transduction	4
tae00270	Cysteine and methionine metabolism	3
tae00670	One carbon pool by folate	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	6
tae04075	Plant hormone signal transduction	6
tae00270	Cysteine and methionine metabolism	3
tae00670	One carbon pool by folate	3
tae04981	Folate transport and metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00920	Sulfur metabolism	2
hvu01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu04130	SNARE interactions in vesicular transport	2
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	4
sbi00940	Phenylpropanoid biosynthesis	3
sbi00941	Flavonoid biosynthesis	3
sbi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	5
bdi04626	Plant-pathogen interaction	5
bdi04981	Folate transport and metabolism	3
bdi00592	alpha-Linolenic acid metabolism	2
bdi00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00270	Cysteine and methionine metabolism	4
bdi00450	Selenocompound metabolism	3
bdi01230	Biosynthesis of amino acids	3
bdi00920	Sulfur metabolism	2
bdi00670	One carbon pool by folate	2

Expression

Expression pattern

Entrez Gene ID^*

103875335

103842126

103869013

125578518

822186

821845

825500

107951360

107914791

107903800

102628438

102614076

102618286

100812265

100811127

100790567

100264835

100852835

100247323

7474182

7466898

7464849

25499146

25485172

11422561

101251816

101262954

102595885

102595383

107831596

107796068

107759758

4332095

4352747

541873

541874

123074822

123102264

123110477

123451848

123449286

8056874

8070125

100841399

100838685

100836808

66055113

The preparation time of this page was 0.2 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	3	3	3	3	3	2	2	3	2	3	3	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103875335 (bra-r.6 coexpression data)

Top 50 enrichment test to 103875335 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**