ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	106346242	uncharacterized LOC106346242
ath-u.5	POLD4	polymerase delta 4
gma-u.5	100778329	DNA polymerase delta subunit 4
gma-u.5	100799459	DNA polymerase delta subunit 4
vvi-u.5	100263057	uncharacterized LOC100263057
ppo-u.5	7493896	DNA polymerase delta subunit 4
ppo-u.5	7491082	uncharacterized LOC7491082
mtr-u.5	25493349	DNA polymerase delta subunit 4
sly-u.5	101255630	uncharacterized LOC101255630
sly-u.5	101262116	uncharacterized LOC101262116
osa-u.5	4347604	uncharacterized LOC4347604
osa-u.5	4344737	uncharacterized LOC4344737
zma-u.5	100282638	polymerase delta 4
zma-u.5	100280534	delta DNA polymerase

functional annotation

KEGG

bna03030 [list] [network] DNA replication (118 genes)

bna03410 [list] [network] Base excision repair (126 genes)

bna03420 [list] [network] Nucleotide excision repair (233 genes)

bna03430 [list] [network] Mismatch repair (77 genes)

bna03440 [list] [network] Homologous recombination (136 genes)

GO BP

GO:0000731 [list] [network] DNA synthesis involved in DNA repair	(4 genes)	IEA
GO:0006261 [list] [network] DNA-templated DNA replication	(215 genes)	IEA

GO CC

GO:0043625 [list] [network] delta DNA polymerase complex

(9 genes)

IEA

GO MF

GO:0003887 [list] [network] DNA-directed DNA polymerase activity

(51 genes)

IEA

Protein

XP_048638056.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 2, cyto_nucl 1

(predict for XP_048638056.1)

Subcellular
localization
TargetP

chlo 4, other 4

(predict for XP_048638056.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106346242	ath-u.5 for POLD4	gma-u.5 for 100778329	gma-u.5 for 100799459	vvi-u.5 for 100263057	ppo-u.5 for 7493896	ppo-u.5 for 7491082	mtr-u.5 for 25493349	sly-u.5 for 101255630	sly-u.5 for 101262116	osa-u.5 for 4347604	osa-u.5 for 4344737	zma-u.5 for 100282638	zma-u.5 for 100280534

Ortholog ID: 3740

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

cre

Symbol

POLD4

Function^*

uncharacterized LOC106346242

uncharacterized LOC106401749

uncharacterized LOC103871760

polymerase delta 4

uncharacterized LOC107950350

DNA polymerase delta subunit 4

uncharacterized LOC102608934

DNA polymerase delta subunit 4

uncharacterized LOC100263057

DNA polymerase delta subunit 4

uncharacterized LOC7491082

DNA polymerase delta subunit 4

uncharacterized LOC101262116

uncharacterized LOC101255630

uncharacterized LOC102606360

DNA polymerase delta subunit 4-like

uncharacterized LOC107781395

uncharacterized LOC107810329

uncharacterized LOC4344737

polymerase delta 4

delta DNA polymerase

uncharacterized LOC123416082

uncharacterized LOC123396596

uncharacterized LOC8069649

DNA polymerase delta subunit 4

uncharacterized LOC100836085

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna03030	DNA replication	2
bna03410	Base excision repair	2
bna03420	Nucleotide excision repair	2
bna03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03030	DNA replication	2
bna03410	Base excision repair	2
bna03420	Nucleotide excision repair	2
bna03430	Mismatch repair	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	6
bra03008	Ribosome biogenesis in eukaryotes	3
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	5
ath00240	Pyrimidine metabolism	2
ath01232	Nucleotide metabolism	2
ath03030	DNA replication	2
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	3
ghi03410	Base excision repair	3
ghi03420	Nucleotide excision repair	3
ghi03430	Mismatch repair	3
ghi03440	Homologous recombination	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2
cit03420	Nucleotide excision repair	2
cit03018	RNA degradation	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma03082	ATP-dependent chromatin remodeling	2
gma03030	DNA replication	2
gma03410	Base excision repair	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma03010	Ribosome	3
gma03030	DNA replication	2
gma03410	Base excision repair	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03010	Ribosome	3
vvi03013	Nucleocytoplasmic transport	2
vvi03015	mRNA surveillance pathway	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03030	DNA replication	2
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2
ppo03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	4
sly04120	Ubiquitin mediated proteolysis	2
sly03040	Spliceosome	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	7
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03410	Base excision repair	3
sot00230	Purine metabolism	2
sot00240	Pyrimidine metabolism	2
sot00480	Glutathione metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03420	Nucleotide excision repair	4
nta03060	Protein export	2
nta04120	Ubiquitin mediated proteolysis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi03015	mRNA surveillance pathway	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03430	Mismatch repair	2

Expression

Expression pattern

Entrez Gene ID^*

106346242

106401749

103871760

837513

107950350

107937850

102608934

100778329

100799459

100263057

7493896

7491082

25493349

101262116

101255630

102606360

102605871

107781395

107810329

4344737

100282638

100280534

123416082

123396596

8069649

8054860

100827592

100836085

5727144

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 106346242 (bna-r.1 coexpression data)

Top 50 enrichment test to 106346242 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	1	2	1	2	1	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106346242 (bna-r.1 coexpression data)

Top 50 enrichment test to 106346242 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**